BO24374.complete Sequence
1834 bp assembled on 2010-06-28
GenBank Submission: KX794491
> BO24374.complete
GAAGTTATCAGTCGACATGGAGAAGAAGGTCTATCAGGACACAACGCGAC
CGCTGCCCAGGGTCTCCCGTGCACGGTACTATAACAAGCACGACAAGAGC
GATCTGGGCGACGACTTTGTGGCGCCCGACGCGGGATGGGCGTGGATCGT
TTGCGTCGCCGCTGGCGTTTCAAATCTCTCCATTTACCCCTGCCTGCAAC
AGTTTGGCTTTCTATTCAGGGAGCGCCTGTCCGATCTGGGCATGTCCAGT
TCCCAGATTACAGCCATCATTAACGCAAATCCGGCCGTATCGGCCTGCAC
GGGTCTGCTCAATGGACCGATGTTCCGGAGGTTCACCTTTCGCCAGGTGG
CCATGGCCGGTTCTCTGCTAATCTCCGGGAGTCTCATACTAACCGCCTTC
TGTGAAACCTTTCTCAGCTACATGGTGGCCTACGCCCTGTTGTTTGGCTT
TGGCATGGGCATTAGTGTGTCGGCCTCCTCGCTGGCGATCAACACGTACT
TCCAGAAGAAGCGTCGTCGGGCGGCCGGGTTTTCGTGGACCATAACGGGT
CTGGGACCGATCTTTCTGCCGCATCTGGTCACCTTTTTGCTGACCATTTA
CGGGGTGCAGGGGACCACGCTACTCTTCGCCGCCATCTCGCTGCACTCGT
TCGTTTGCGCCCTGATCTATCAGCCGGTTCGGTACCATGTGAAGCCACCG
GTGGAGCAGCTGGCGGATCAGGAGCAGCAGGCGGAGGCGTTGTGTGCCCA
CTGCTCGTGGCAGCAGAAACGCGAGCCGGGCGGCATATTCTCCAGTCAGT
ATCTATGCCAGGACGACGATGCCCAGCGACCGGGCTACGAGATCTGTGAG
CCCGGCACACCGATGCTCTCGCGCGCCAACGATGGCTGGTATGGATCCCG
GCTATCGCTGACCTCGGGCCGCCTTCGCTTTCGCACCATCTCGAGCTCCA
AGGATCTGGAGCAGACGCAGCGACTGCATTGTCCCATTAGCGAGGAGCAG
AACCACGAGAGCGATGAGTTCCTGCGCCCCAATAACTTTCGCAGGGAGCG
GGTGGAGTCCAACCTGGAGGCCAAGCTGTGTTGCCAGTGTTCGGCCAAGC
GGGAGGAGCACAACAATAACCGAAAGGAGAAGGAAGCCGAGGCTGAGGAG
GCGGGAATGGAGTCGGCTCCACTGCACGATCCGCAGATGAGCTTTCTGGC
CAAGGTGGTGACCTTCTTCGATCTGGACCTGCTGCGCGACTTCACCTTCG
TCAATCTGGTGGCCGGACTGACCATCATAAACTTTGGGGAGCTCAACTTC
TCCATACTGACGCCCTTCATTCTGGTGGACTTTGGCTTCGATACTCCACA
GATTACGCTGGCCATGTCGCTGCTGGCGGGACTGGACATCACCATGCGCT
TCATGGTCCCCTTCCTCACTGAGAAGATTCCGTGGGACAACCGGGTATTC
TTCCTCATCGGCGTGGTGGGCATCGCTCTCGGCCGCACAGTGGTGGCCTG
CACGCGTTCCTACAGCCTGATCCTCTGCAGCTTCGTGTGGATCGGTCTCT
GCAAGGGAGTGCGTACCATCTTCTGGCCACTGATCATACCCGGCTATGTG
CCTCTGAACCGCCTGCCAGGCGCCTCGGGACTGCAACTGCTGATCTCGGG
ACTATTCACCCTGATCGGTGGTCCATTTGTCGGCCTGGTGCGTGACCGTT
ACGACTATTCGGTTACCCTGCACTGTCTCAATATGATGTCCTTTGTGGCA
GCAACATCCTGGTCCTTGGAGGCCCTCATCCGGCGGCATCGCCGCAAACA
GCGCCTGGTGAACAGCGCAAGCTTTCTAGACCAT
BO24374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14196-RA | 1803 | CG14196-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| CG8051-RB | 1851 | CG8051-PB | 205..282 | 92..169 | 195 | 83.3 | Plus |
| CG8051-RA | 1851 | CG8051-PA | 205..282 | 92..169 | 195 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14196-RA | 2455 | CG14196-RA | 534..2334 | 16..1816 | 9005 | 100 | Plus |
| CG8051-RB | 2278 | CG8051-RB | 381..458 | 92..169 | 195 | 83.3 | Plus |
| CG8051-RA | 2559 | CG8051-RA | 662..739 | 92..169 | 195 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19236504..19237741 | 1683..446 | 6190 | 100 | Minus |
| X | 23542271 | X | 19237898..19238169 | 447..176 | 1360 | 100 | Minus |
| X | 23542271 | X | 19238309..19238468 | 175..16 | 800 | 100 | Minus |
| X | 23542271 | X | 19236180..19236314 | 1816..1682 | 675 | 100 | Minus |
| X | 23542271 | X | 19303643..19303720 | 169..92 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:49:38 has no hits.
BO24374.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:09:45 Download gff for
BO24374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14196-RA | 1..1800 | 17..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:24 Download gff for
BO24374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14196-RA | 535..2334 | 17..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:40 Download gff for
BO24374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14196-RA | 535..2334 | 17..1818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:40 Download gff for
BO24374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19236177..19236313 | 1683..1818 | 98 | <- | Minus |
| X | 19236505..19237740 | 447..1682 | 100 | <- | Minus |
| X | 19237899..19238169 | 176..446 | 100 | <- | Minus |
| X | 19238309..19238467 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:24 Download gff for
BO24374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19130210..19130346 | 1683..1818 | 98 | <- | Minus |
| arm_X | 19130538..19131773 | 447..1682 | 100 | <- | Minus |
| arm_X | 19131932..19132202 | 176..446 | 100 | <- | Minus |
| arm_X | 19132342..19132500 | 17..175 | 100 | | Minus |
BO24374.pep Sequence
Translation from 16 to 1834
> BO24374.pep
MEKKVYQDTTRPLPRVSRARYYNKHDKSDLGDDFVAPDAGWAWIVCVAAG
VSNLSIYPCLQQFGFLFRERLSDLGMSSSQITAIINANPAVSACTGLLNG
PMFRRFTFRQVAMAGSLLISGSLILTAFCETFLSYMVAYALLFGFGMGIS
VSASSLAINTYFQKKRRRAAGFSWTITGLGPIFLPHLVTFLLTIYGVQGT
TLLFAAISLHSFVCALIYQPVRYHVKPPVEQLADQEQQAEALCAHCSWQQ
KREPGGIFSSQYLCQDDDAQRPGYEICEPGTPMLSRANDGWYGSRLSLTS
GRLRFRTISSSKDLEQTQRLHCPISEEQNHESDEFLRPNNFRRERVESNL
EAKLCCQCSAKREEHNNNRKEKEAEAEEAGMESAPLHDPQMSFLAKVVTF
FDLDLLRDFTFVNLVAGLTIINFGELNFSILTPFILVDFGFDTPQITLAM
SLLAGLDITMRFMVPFLTEKIPWDNRVFFLIGVVGIALGRTVVACTRSYS
LILCSFVWIGLCKGVRTIFWPLIIPGYVPLNRLPGASGLQLLISGLFTLI
GGPFVGLVRDRYDYSVTLHCLNMMSFVAATSWSLEALIRRHRRKQRLVNS
ASFLDH
BO24374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14196-PA | 600 | CG14196-PA | 1..600 | 1..600 | 3136 | 100 | Plus |
| out-PB | 655 | CG8062-PB | 13..644 | 4..590 | 1389 | 45.8 | Plus |
| out-PA | 655 | CG8062-PA | 13..644 | 4..590 | 1389 | 45.8 | Plus |
| CG8051-PB | 616 | CG8051-PB | 67..614 | 24..600 | 1262 | 45.8 | Plus |
| CG8051-PA | 616 | CG8051-PA | 67..614 | 24..600 | 1262 | 45.8 | Plus |
