BO24384.complete Sequence
1690 bp assembled on 2010-06-28
GenBank Submission: KX795090
> BO24384.complete
GAAGTTATCAGTCGACATGCTGAAATCGATAGTGACCGTCATCCGTTTGC
ACCTGGAGGAGCTGTGGCTCAGGATCCTGGGGTACATCATGCGCCGCTTC
CTGCGCTCGGCCATGATCGTCTTCAGCTGGTTCGTCGTCCCCTACAGCCG
GTACACCAACATCAAGGTGATCCGGCGCAAATTGCCGCCCATCCGGAGCC
ACCTGCTCGAGATTCCCGCCGTCGACCTGGCCAAGCTGATTCGCACCAGA
AAGATTAAAAGCGAAGAAGTCGTGGAAGCCTACATCGAACGATGTCGACA
GGTAAATCCTCTGATAAATGCCATCGTCCAGGATCGCTTCGAAGAGGCAT
TGGAGGAGGCTCGGGAGATAGACAACGTGATAGCGATGGGCATTAACAGC
GTGGAGTCGATGGAGGAGCTGACCCCGTTGCTGGGCATTCCGGTGACCGT
GAAGGAGAGCATTGCCGTCAAGGGCATGACCAACCAGGCAGGTCGCGTCT
TCAAGACGCCGCAGATAGCCAAGTCGGATGCGCCGGTGGTGGAGCAGATC
AAGCGCTCCGGCGGCATCATCCTTCTGGTGTCCAACACACCGGAGCTTTG
CCTGCTGTGGGAGACGTACAACAACGTGACGGGTCAGACGAAGAATCCGT
ACGACCTGAAGCGCACTCCGGGCGGCTCATCGGGCGGCGAGGCGGCCCTC
CTGGCCAGCGGTGCCTCCCTGCTGGGCCTCACCTCGGACATTGGCGGCTC
TTCGCGCCTACCGGCCATGTTCAGTGGCATTTGGGGCCACAAGCCCACAC
CGTATGCGGTCTCCTTTAAAGGTCATCATCCGACGAGTGACTTTCCCAAG
TGGGGAGATTTCTTCACCATCGCGCCGATGACCCGCTACGCCAAGGATCT
GCCGCTGCTGCTCAAGTGCATGAGCGATCCCACGGGTCCCAAGCTAACGC
TGGACAGGCCTATCAGTGTGAATGGTATCCGGTTCTTCTTCATGGACAAC
GACGGGCCATCGGGCATGATGCGGCCGCTGAGCAGGGATCTGCATGCGGC
CATCAACCGCGTGGCCACCGATTTCAATGCCAAGCGGGTGAACATACGCA
AGATGAAGTGGTCGCTGGACATCTCGCTGTCCGCCATGCTGACCATGAAA
AACATCGAGACCATCTACCACAAGACGGAGGAGGGCGAGCAGCCCAAGAC
CGTGTGCAAGGAGACGGTCAAGTACTTCTTCGGATGCTCGGACAGCATCC
TGCCGTCGGTGATCTTTGGCCATCTGCAGAACTTCATGAAGATCATCCCA
AACTCGCGCCACAAGCACCTGGCCAGCATCATCGAGGCGCTCAAGACTGA
ATTCAAGGAGATGCTGGGCAACGACGGCGTCTTCCTCTATCCGACCTTTC
CCAACACGGCGCACCAGCATTACCAGATCTACCACAAGCTCCTGGAGCCC
ATGTACATGGCCATCTTCAACACGCTTGGCCTGCCGGTTACCAACTGCAT
GATCGGTCTGGACCGGCGCAACCTGCCCATGGGCATCCAGGTGGTGGCCA
ATCCAGGCCAGGATCACCTTAGCCTGGCGGTGGCCCGCGAAATGGAGCGC
CGCTACGGCGGATGGGTGCGTCCTCCGTCCGAGGACAGCCACAGCAGCGG
TGGGAGCAGCAAGCAGCGTGGCGCAAGCTTTCTAGACCAT
BO24384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:49:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5191-RB | 1659 | CG5191-PB | 1..1656 | 17..1672 | 8280 | 100 | Plus |
| CG5191-RF | 1587 | CG5191-PF | 1..1584 | 89..1672 | 7920 | 100 | Plus |
| CG5191-RC | 1587 | CG5191-PC | 1..1584 | 89..1672 | 7920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:49:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5191-RB | 2630 | CG5191-RB | 435..2090 | 17..1672 | 8280 | 100 | Plus |
| CG5191-RF | 2405 | CG5191-RF | 211..1865 | 18..1672 | 8275 | 100 | Plus |
| CG5191-RE | 2687 | CG5191-RE | 493..2147 | 18..1672 | 8275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20571087..20572460 | 299..1672 | 6870 | 100 | Plus |
| 3R | 32079331 | 3R | 20566426..20566609 | 70..253 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 20561357..20561412 | 18..73 | 280 | 100 | Plus |
| 3R | 32079331 | 3R | 20570600..20570651 | 252..303 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:49:48 has no hits.
BO24384.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:09:48 Download gff for
BO24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5191-RB | 440..2095 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:28 Download gff for
BO24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5191-RB | 435..2090 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:45 Download gff for
BO24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5191-RB | 435..2090 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:45 Download gff for
BO24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20561355..20561411 | 17..72 | 98 | -> | Plus |
| 3R | 20566429..20566609 | 73..253 | 100 | -> | Plus |
| 3R | 20570602..20570649 | 254..301 | 100 | -> | Plus |
| 3R | 20571090..20572460 | 302..1674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:28 Download gff for
BO24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16387077..16387133 | 17..72 | 98 | -> | Plus |
| arm_3R | 16392151..16392331 | 73..253 | 100 | -> | Plus |
| arm_3R | 16396324..16396371 | 254..301 | 100 | -> | Plus |
| arm_3R | 16396812..16398182 | 302..1674 | 99 | | Plus |
BO24384.pep Sequence
Translation from 16 to 1690
> BO24384.pep
MLKSIVTVIRLHLEELWLRILGYIMRRFLRSAMIVFSWFVVPYSRYTNIK
VIRRKLPPIRSHLLEIPAVDLAKLIRTRKIKSEEVVEAYIERCRQVNPLI
NAIVQDRFEEALEEAREIDNVIAMGINSVESMEELTPLLGIPVTVKESIA
VKGMTNQAGRVFKTPQIAKSDAPVVEQIKRSGGIILLVSNTPELCLLWET
YNNVTGQTKNPYDLKRTPGGSSGGEAALLASGASLLGLTSDIGGSSRLPA
MFSGIWGHKPTPYAVSFKGHHPTSDFPKWGDFFTIAPMTRYAKDLPLLLK
CMSDPTGPKLTLDRPISVNGIRFFFMDNDGPSGMMRPLSRDLHAAINRVA
TDFNAKRVNIRKMKWSLDISLSAMLTMKNIETIYHKTEEGEQPKTVCKET
VKYFFGCSDSILPSVIFGHLQNFMKIIPNSRHKHLASIIEALKTEFKEML
GNDGVFLYPTFPNTAHQHYQIYHKLLEPMYMAIFNTLGLPVTNCMIGLDR
RNLPMGIQVVANPGQDHLSLAVAREMERRYGGWVRPPSEDSHSSGGSSKQ
RGASFLDH
BO24384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5191-PB | 552 | CG5191-PB | 1..552 | 1..552 | 2872 | 100 | Plus |
| CG5191-PF | 528 | CG5191-PF | 1..528 | 25..552 | 2753 | 100 | Plus |
| CG5191-PC | 528 | CG5191-PC | 1..528 | 25..552 | 2753 | 100 | Plus |
| CG5191-PE | 528 | CG5191-PE | 1..528 | 25..552 | 2753 | 100 | Plus |
| CG5191-PD | 429 | CG5191-PD | 1..429 | 124..552 | 2261 | 100 | Plus |
