BO24385.complete Sequence
1834 bp assembled on 2010-06-28
GenBank Submission: KX799172
> BO24385.complete
GAAGTTATCAGTCGACATGCCCGAAATGGATCCTTTTTCCGCTGACATTA
TGAGATTCTTTAAACGAAGGCAGTTCAGAGAGTGTAGCAGCGATAAAGAT
TTGCTAATAAGTGAGTTCGATTCGCATCTACGACAATACAGGATCAAAAT
TGATGAGAACTCTGCTCAGCAGCATTTAAAGAAGTTCGGCAATGCAACAC
TCAAGTGCGAATATCAGGTGATAGGTCGCAATAAAAAAGACTCGTTTCCG
GATAATCATTTTAGTTTTTCCAAACTACAACCCTTGAGTCAATCCTTTCT
GGTACCAAAGACAATAGACTTTATATCCACCCAATGCCATGCCGTTCATG
GAAACATCGATTTGAAGCTTCTGCAGAAGGACGCCTTTCTATTTGTACAG
GATCGCCTGAATCACGAGCATAAGAACACGGAGCATCATCGTCCAGATTT
GCAATCCAAGCCGAATGTGATCATCCTGGGCATTGATTCCACATCCCGCA
TGAACCTGAGACGCTCCATGCCCAAGGTTCACAAATTCTTGCAAAGACCA
GGATGGTTTGAGATGCAGGGTTACAATAAGGTCGGTGAAAATACGCTGCC
CAATCTTTTGGCCATACTCACTGGAAATGCCGAGGAAAACGCTCTATTCA
ATGGTCGATTTGGGCACAGCGGATTCATTGACAAACTAAAGTTCATTTGG
CAGCTGTTCAAGAAGAATGGCTACATGACAGCTTTTGGAGAAGACTGCGC
TAAGATTAACACATTTAACTACCAGAAGCCAGGATTTAAGCAACAGCCAG
TGGATTTTTATCTTAGAAACTTTATTGTGGCTTTGGAAACTATTTTAAAG
ACGAGGCGCGAGTTTGGAAATGTTTTCTGCCTGGGACGAAAGTTGGGTTT
CCAATACGTATTCGACTTTGCCAGGCAGTTTATGCAACGCTTTGAGAATT
CAGCACCCGTATTTGGAATCTTCTGGAGCAATAGTTTCACCCATGAGGAT
TTCCTAGGAGCCACTGCCTTGGATCACGTATTCTTGGAATACCTTACGTT
GTACGATGAACTTGGCTTTTTCAATCGTTCAATAGTAATGGTGTTGAGTG
ACCATGGCTATAGATATGGTGTGACTCGACAGGCTTCCAAATCGGGTTAT
CTGGAAGAACGTCTTCCACTAATGTTCATACATGTTCCTCCATGGTTCAG
AAAGATATATCCCCAGTATGTGGAAAACCTGAAGATCAACCAGAATCGCC
TGTCCTCAGGCTTTGATCTCCACATGACCCTACACCATCTGCTCCACCTG
AATGCCACTTCTATGGCGGATTTCAGTCCAAAGCTTCAGGCATCGCAGTG
TAAAATGTGCCAATCCCTGTTCTTCCAACTTCCGGCTAACAGAAACTGTT
CTCATGCGGGAATCCGTGAAAAGTGGTGTTCCTGCGAACCCACTGAAACG
GTAACCAACCAAAGGCTCCTCAGAAAAGTGGCTCAAGAGGTGGTGCATCA
TATGAATCGGCATTTGCGGGATCGAAACCTCACTACGCTTTGCCAGAATT
ACGCTTTAAAGAAGGTCCTTTACTTGGATAGCAAAATCTCATTGAGCGAA
GACTCAGTCGAGGACGAACAGCTGCACACCTACATAATCACATTCGAAAC
CAATCCGAGTTCAGCGCATTTCGAGGCCACTGTACAGTGGAACTCGGAAA
AGGAAACCTTGAACATGAATGTGGACGAGCTGAGTCGATTGGAATCCTAC
GAGAAGCATAGCAAGTGCACAAGAGATCCAATAATCAAGAAATATTGTAT
ATGCAAAGAATTTAAAGCAAGCTTTCTAGACCAT
BO24385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:49:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9168-RA | 1803 | CG9168-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| CG10730-RC | 1935 | CG10730-PC | 558..714 | 457..613 | 200 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9168-RA | 1952 | CG9168-RA | 139..1938 | 17..1816 | 9000 | 100 | Plus |
| CG10730-RC | 2000 | CG10730-RC | 565..721 | 457..613 | 200 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1411522..1413075 | 263..1816 | 7770 | 100 | Plus |
| 3L | 28110227 | 3L | 1411226..1411473 | 17..264 | 1240 | 100 | Plus |
| 2L | 23513712 | 2L | 20071360..20071516 | 613..457 | 200 | 75.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:49:53 has no hits.
BO24385.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:09:49 Download gff for
BO24385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9168-RA | 1..1800 | 17..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:31 Download gff for
BO24385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9168-RA | 139..1938 | 17..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:46 Download gff for
BO24385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9168-RA | 139..1938 | 17..1818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:46 Download gff for
BO24385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1411226..1411473 | 17..264 | 100 | -> | Plus |
| 3L | 1411524..1413075 | 265..1818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:31 Download gff for
BO24385.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1411226..1411473 | 17..264 | 100 | -> | Plus |
| arm_3L | 1411524..1413075 | 265..1818 | 99 | | Plus |
BO24385.pep Sequence
Translation from 16 to 1834
> BO24385.pep
MPEMDPFSADIMRFFKRRQFRECSSDKDLLISEFDSHLRQYRIKIDENSA
QQHLKKFGNATLKCEYQVIGRNKKDSFPDNHFSFSKLQPLSQSFLVPKTI
DFISTQCHAVHGNIDLKLLQKDAFLFVQDRLNHEHKNTEHHRPDLQSKPN
VIILGIDSTSRMNLRRSMPKVHKFLQRPGWFEMQGYNKVGENTLPNLLAI
LTGNAEENALFNGRFGHSGFIDKLKFIWQLFKKNGYMTAFGEDCAKINTF
NYQKPGFKQQPVDFYLRNFIVALETILKTRREFGNVFCLGRKLGFQYVFD
FARQFMQRFENSAPVFGIFWSNSFTHEDFLGATALDHVFLEYLTLYDELG
FFNRSIVMVLSDHGYRYGVTRQASKSGYLEERLPLMFIHVPPWFRKIYPQ
YVENLKINQNRLSSGFDLHMTLHHLLHLNATSMADFSPKLQASQCKMCQS
LFFQLPANRNCSHAGIREKWCSCEPTETVTNQRLLRKVAQEVVHHMNRHL
RDRNLTTLCQNYALKKVLYLDSKISLSEDSVEDEQLHTYIITFETNPSSA
HFEATVQWNSEKETLNMNVDELSRLESYEKHSKCTRDPIIKKYCICKEFK
ASFLDH
BO24385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9168-PA | 600 | CG9168-PA | 1..600 | 1..600 | 3208 | 100 | Plus |
| CG10730-PC | 644 | CG10730-PC | 40..638 | 1..598 | 1536 | 48.7 | Plus |
| CG9988-PA | 668 | CG9988-PA | 75..662 | 1..597 | 1150 | 40.5 | Plus |
| CG18088-PC | 663 | CG18088-PC | 69..658 | 1..596 | 1106 | 38.3 | Plus |
| CG18088-PB | 663 | CG18088-PB | 69..658 | 1..596 | 1106 | 38.3 | Plus |
