BO24389.complete Sequence
1852 bp assembled on 2010-06-28
GenBank Submission: KX797851
> BO24389.complete
GAAGTTATCAGTCGACATGAGTGGCGTGCTGCGTCGCGGTTCCCTGAATT
TCGATTGCGTTGGCGGGCCGCGGGACAAGGGCAGGGGCAGCCTGGAGGCG
AACCTGTATGGCGGATATCGCGAGACAAGGCCCGGCCCAAAGACTCCGGA
AATCAGTGTCATAGCATTGGACTTTCGACGATATTCCGAGGACCTGAAGA
AACCACCTTCAGCGGAGCAAACGGAGCAGCCACCGAGCAGGGATCTCAGT
CAGGATGAGGACAGCGATGTGATATCAAATTTCCTGGGCCACTACACCCG
CTGGAGTTTTCTTTGGACCCTGCTGCTCTGCCTGTTCCAGTTGCCCACCA
CTTTTCACCTGTTCATGTTTGTCTTCCAGATTGCGCCGAAAGACTTTTGG
TGTGCCCGGCCGGAAAACCTCATGCAGATGAGCGTTTCCGAGTGGCGCAA
TATTAGTCAGTCCTCCAATGGCTGCCTGCTCCTCGATGTGGACTACACCC
AGGTCACCTACGAGAATAACCAACTCATCAACTGGCCCGAAAATGCCACA
GATTTGGGCTACCGACAGTGCTGGCACTTTGAGTTCTCCGACGTGGATGG
ATCGGCCAAGACCCTGGTGCAGGAATTTGATCTGGTTTGCGGACGCGATA
TCCTCAGCTTGGTGGAAACCTGCTTCCTGGTGGGCGCGGCAGCGGGAGCG
GTTCTCAGCGGATGGATATCGGATCGCTTCGGCAGAAGACACACTCTAAT
GGCATTCGTCACTATTCAGAGCGTATTTGGTGGAATTTTGGCCTTCTCAA
CATCGGTGGCCATGTTCATGTCGCTACGTGTTATAATTGGATTCGCATCA
ATGACCGTGACTGTTGTGAGCTTCGTGCTGGTGGTGGAGCTGGTCTCCGG
CAAGTGGCGCACCGTAATCGGCATTCTCAACATTCTGCCCGTGGCCATCT
CCTACGTCCTCTCCGCCGGACTGGCCTACCTCATCCGCGACTGGCGGCAC
CTCCAGCTGGCCATCTCCTGGCCATGGCTAATCATGCTCAGCATTTGGTT
CTGGCTGCCGGAGTCTCCACGCTGGCTTTTGGCCCAGGGCCGGCTGGACG
AGCTGTGCGGGCTAATTGAGCGAGCGGCCCGAATGAATGGCACCAGCGCC
AGTTTGCCCAGCAACTATCGCAAGACCCTCGAGGCGGCTGTACCGCGGGC
GGTCCAATCTCCACCAGAAGCAACGACCAGCGTAGAGTCGAAGGCAGTGG
AGGCAGATGCACCGGATCCAAGTGCAAGTGGCCATGTGAATCCCCTTCTG
GTGGTATTCAGTGCAAAGTACTGGCGCACCACATGTTTAACCCTGGTCAT
CTGGCTGACACTGATCATCATTTACTTTGGACTCACGTTGCACCTCAGCA
ATTTGGGTGGCAATATCTACATCAATAGTGCCGTGGCTGGAACCGTGGAG
GCCATCTCCATTTGCATTAGCATCCTGGTGGTCTTGAAAGTGGGAATCCG
ACGTAGTCTTATTGGTTACATGTTGTTGCCGGGTCTTTGCTGCTTAGCCA
CCAATTTGGTGTCAAATCAAACGGGTGTGATTGCACTGGCCACCATAGCC
AAGTGTCTCATTGGAGCCAACAACGCCATCATTCCCACCTACACAGCGAT
GCAATATCCCACAATAGTTCGAAACTTTGGCGTTGGCATGGGCAACCTGG
CATCGGGCATTGCCCTAATCCTTGTTCCCTTTCTCTGGAAACTGGAGCAC
ATTGATCCCCTGCTGCCCTTGAATGTTATGGGAGTTTGTGGCCTGATTGG
CGCCGTTGCCATCAGCCTTATGAAGGATGTGGTCGCAAGCTTTCTAGACC
AT
BO24389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8925-RB | 1821 | CG8925-PB | 1..1818 | 17..1834 | 9090 | 100 | Plus |
| CG8925-RA | 2013 | CG8925-PA | 550..2010 | 374..1834 | 7305 | 100 | Plus |
| CG8925-RA | 2013 | CG8925-PA | 1..363 | 17..379 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8925-RB | 2206 | CG8925-RB | 162..1984 | 12..1834 | 9100 | 99.9 | Plus |
| CG8925-RA | 2398 | CG8925-RA | 716..2176 | 374..1834 | 7305 | 100 | Plus |
| CG8925-RA | 2398 | CG8925-RA | 162..529 | 12..379 | 1825 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16179341..16179892 | 1047..1598 | 2760 | 100 | Plus |
| 3R | 32079331 | 3R | 16177531..16177945 | 368..782 | 2030 | 99.3 | Plus |
| 3R | 32079331 | 3R | 16172152..16172519 | 12..379 | 1825 | 99.7 | Plus |
| 3R | 32079331 | 3R | 16178396..16178666 | 779..1049 | 1355 | 100 | Plus |
| 3R | 32079331 | 3R | 16179951..16180099 | 1597..1745 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 16180163..16180253 | 1744..1834 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:11 has no hits.
BO24389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:09:53 Download gff for
BO24389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8925-RB | 149..1966 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:59 Download gff for
BO24389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8925-RB | 149..1966 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:06 Download gff for
BO24389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8925-RB | 167..1984 | 17..1836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:06 Download gff for
BO24389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16172157..16172519 | 17..379 | 100 | -> | Plus |
| 3R | 16177543..16177942 | 380..779 | 100 | -> | Plus |
| 3R | 16178397..16178664 | 780..1047 | 100 | -> | Plus |
| 3R | 16179342..16179892 | 1048..1598 | 100 | -> | Plus |
| 3R | 16179953..16180098 | 1599..1744 | 100 | -> | Plus |
| 3R | 16180164..16180253 | 1745..1836 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:59 Download gff for
BO24389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12003265..12003664 | 380..779 | 100 | -> | Plus |
| arm_3R | 11997879..11998241 | 17..379 | 100 | -> | Plus |
| arm_3R | 12004119..12004386 | 780..1047 | 100 | -> | Plus |
| arm_3R | 12005064..12005614 | 1048..1598 | 100 | -> | Plus |
| arm_3R | 12005675..12005820 | 1599..1744 | 100 | -> | Plus |
| arm_3R | 12005886..12005975 | 1745..1836 | 97 | | Plus |
BO24389.pep Sequence
Translation from 16 to 1852
> BO24389.pep
MSGVLRRGSLNFDCVGGPRDKGRGSLEANLYGGYRETRPGPKTPEISVIA
LDFRRYSEDLKKPPSAEQTEQPPSRDLSQDEDSDVISNFLGHYTRWSFLW
TLLLCLFQLPTTFHLFMFVFQIAPKDFWCARPENLMQMSVSEWRNISQSS
NGCLLLDVDYTQVTYENNQLINWPENATDLGYRQCWHFEFSDVDGSAKTL
VQEFDLVCGRDILSLVETCFLVGAAAGAVLSGWISDRFGRRHTLMAFVTI
QSVFGGILAFSTSVAMFMSLRVIIGFASMTVTVVSFVLVVELVSGKWRTV
IGILNILPVAISYVLSAGLAYLIRDWRHLQLAISWPWLIMLSIWFWLPES
PRWLLAQGRLDELCGLIERAARMNGTSASLPSNYRKTLEAAVPRAVQSPP
EATTSVESKAVEADAPDPSASGHVNPLLVVFSAKYWRTTCLTLVIWLTLI
IIYFGLTLHLSNLGGNIYINSAVAGTVEAISICISILVVLKVGIRRSLIG
YMLLPGLCCLATNLVSNQTGVIALATIAKCLIGANNAIIPTYTAMQYPTI
VRNFGVGMGNLASGIALILVPFLWKLEHIDPLLPLNVMGVCGLIGAVAIS
LMKDVVASFLDH
BO24389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8925-PB | 606 | CG8925-PB | 1..606 | 1..606 | 3149 | 100 | Plus |
| CG8925-PA | 670 | CG8925-PA | 1..670 | 1..606 | 2859 | 85.2 | Plus |
| CG6006-PC | 603 | CG6006-PC | 56..580 | 63..604 | 914 | 35.1 | Plus |
| CG6006-PF | 569 | CG6006-PF | 17..519 | 63..586 | 904 | 36.4 | Plus |
| CG6006-PE | 569 | CG6006-PE | 17..519 | 63..586 | 904 | 36.4 | Plus |
