BO24392.complete Sequence
1750 bp assembled on 2010-06-28
GenBank Submission: KX794939
> BO24392.complete
GAAGTTATCAGTCGACATGCCTTGTTTTCTGTGCACTCAGACTGTGGATG
ATGCGGCGGGCAATATAGAGTTTGCCTCGGAGGAAGCCGATTCACTTGGC
CTGCGGTGCATCATCGAGAAACACTTCTGGCTTCAGATCCCTGACTCAAA
AAGAGCCGGCTATGTGTGCGGCCCCTGCTGGGAGCAGCTACTGCTCTTTC
ACAACTTTTACCTCAATGTGGAACAAGCCCACAAAGCGCTGGAGCAAACT
GTTTTGAAGGAGACATCTCCGCCAGAAGTGGTTGCTTCCGCTCTAGAAGA
GCACATCGTTAAAAGCGAGCATGACGACAGCGTAGCCGCTGCCGTCAAAC
GCCGACGTGGACGTCCTCGAAAAGTCGCTCAACAGGATGCACGCGAGGAG
TTGAAGAGCGTGCTGGAGCAAATCAATTTAAATGAAATAAAAATCGAGTT
CCCCGAAGCTGACTTGACAATTGCCGATGTGCTTGAGGATCAGGAGGAGC
AGGATTTCCTACCCGACGACTGCATCAGCAAGGAGGGAGCGGAGGATCCA
GAGGTTTTGGAGAAAAAACCGCCGACGCTTAAGCGAAAGGTTAGCGGACG
CTCAAGAGGTCGTCGACGCGTGCAACTCGCGGAACGGCCCAATACAAGCT
GTCTGCCCAAAATCCAGAAATCACAAGAGTTTAATGATTATATTCGCGAG
CACTATAAAGTTCAGTGCCACATCTGTAACTTGCCAATGGAGGACTTCTC
CGAGATGCTGGCCCATGTACGACGGGAGCACAAGCAGCGCGGCTATGCAA
TGTGTTGCAACCGAAAATTCCTTAAGCGGGGAGTTCTTGTCGACCACTTG
CGCCGCCACCAGGACCCTGAAACCTTTAAGTGCTCCATCTGCGGCCGCGT
GATGGGCCACCGTCGAAGTCTTGAGTTGCACATGCGCATGCATGAGATCA
AATCTCGCGGACGACTATACCGCTGTGAACAGTGCTCCAAGGCCTTCTAC
AGCGCCGTCGTCTATGAGCGCCACAAGCTGACTCACATTCCACGAGAGCA
GTGGAAGGTCCCTTGCACGCACTGCGAGAAAACTTATCCCAGTCAGTATA
CGATGCAGCAACATGTTAAGCTGGTCCATTTGAATTTATATGCCAAGATC
TGTGATGTCTGTGGAAAATCGATCAGAGGACGCGAAGCCTTGGCCAGGCA
CATGGAGGAGCACACGGGAGGGCCGCAGGCAGCAATCAAATGCCACTTGT
GCGACTCAATGCTAACCACCAAATATGGACTGGCCCGCCACATAAAAATG
ATGCATACCGCTGAGAACCTGCAGCCGATGCAGTGTGAATTTTGTCTTAA
GATATGCCCCAGTCTACAGGCACACCAGCACCATATCAAGTACACCCACA
ATACGGCACGTAGTCATCAGTGTCCTATGTGCGAAAAGGCCTTCAAGAGA
CCAAATGAACTAAAGGAACACATGACAACCCACACGGGCGAGGTTTTGTA
CACATGCCCCCATTGCCCGCAAACCTTCAATTCAAATGCCAACATGCATG
CGCACCGCAAAAAGGTGCACCGCAAGGAGTGGGAGGAGAACCGACACAAG
CGACTGAATCGTTCTCGCAAATCAGACACCATCATCGCCGTCAGCGTACG
AAAGACCACAGAGACCAGGCAGGATGGAGGGTTGGTACCTGCAGAAGCGA
TAGCAACTACCAGCAGCCCTCGAGCAGAATGCGCAAGCTTTCTAGACCAT
BO24392.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8388-RA | 1719 | CG8388-PA | 1..1716 | 17..1732 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8388-RA | 1865 | CG8388-RA | 101..1816 | 17..1732 | 8580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:48:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16010209..16011160 | 1083..132 | 4760 | 100 | Minus |
| 2R | 25286936 | 2R | 16009772..16010154 | 1466..1084 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 16009450..16009718 | 1732..1464 | 1345 | 100 | Minus |
| 2R | 25286936 | 2R | 16011219..16011338 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:48:40 has no hits.
BO24392.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:10:02 Download gff for
BO24392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8388-RA | 8..1723 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:02 Download gff for
BO24392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8388-RA | 101..1816 | 17..1734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:22 Download gff for
BO24392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8388-RA | 101..1816 | 17..1734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:22 Download gff for
BO24392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16009446..16009716 | 1466..1734 | 99 | <- | Minus |
| 2R | 16009773..16010154 | 1084..1465 | 100 | <- | Minus |
| 2R | 16010209..16011155 | 137..1083 | 100 | <- | Minus |
| 2R | 16011219..16011338 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:02 Download gff for
BO24392.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11896951..11897221 | 1466..1734 | 99 | <- | Minus |
| arm_2R | 11897278..11897659 | 1084..1465 | 100 | <- | Minus |
| arm_2R | 11897714..11898660 | 137..1083 | 100 | <- | Minus |
| arm_2R | 11898724..11898843 | 17..136 | 100 | | Minus |
BO24392.pep Sequence
Translation from 16 to 1750
> BO24392.pep
MPCFLCTQTVDDAAGNIEFASEEADSLGLRCIIEKHFWLQIPDSKRAGYV
CGPCWEQLLLFHNFYLNVEQAHKALEQTVLKETSPPEVVASALEEHIVKS
EHDDSVAAAVKRRRGRPRKVAQQDAREELKSVLEQINLNEIKIEFPEADL
TIADVLEDQEEQDFLPDDCISKEGAEDPEVLEKKPPTLKRKVSGRSRGRR
RVQLAERPNTSCLPKIQKSQEFNDYIREHYKVQCHICNLPMEDFSEMLAH
VRREHKQRGYAMCCNRKFLKRGVLVDHLRRHQDPETFKCSICGRVMGHRR
SLELHMRMHEIKSRGRLYRCEQCSKAFYSAVVYERHKLTHIPREQWKVPC
THCEKTYPSQYTMQQHVKLVHLNLYAKICDVCGKSIRGREALARHMEEHT
GGPQAAIKCHLCDSMLTTKYGLARHIKMMHTAENLQPMQCEFCLKICPSL
QAHQHHIKYTHNTARSHQCPMCEKAFKRPNELKEHMTTHTGEVLYTCPHC
PQTFNSNANMHAHRKKVHRKEWEENRHKRLNRSRKSDTIIAVSVRKTTET
RQDGGLVPAEAIATTSSPRAECASFLDH
BO24392.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8388-PA | 572 | CG8388-PA | 1..572 | 1..572 | 3097 | 100 | Plus |
| CG15073-PA | 580 | CG15073-PA | 1..551 | 1..550 | 801 | 32.3 | Plus |
| CG4282-PA | 652 | CG4282-PA | 193..647 | 108..551 | 692 | 34.3 | Plus |
| CG4707-PA | 673 | CG4707-PA | 206..667 | 113..558 | 691 | 35 | Plus |
| grau-PA | 570 | CG33133-PA | 4..544 | 3..535 | 683 | 29.5 | Plus |
