BO24395.complete Sequence
2197 bp assembled on 2010-06-28
GenBank Submission: KX793755
> BO24395.complete
GAAGTTATCAGTCGACATGGTTCGGAGAAGGGTACTGACTAATTCGGCCA
AGCAGGCTTCGATGAATGCCTATCAGCAGCTGTGGCAGCAGCAGCAATTC
GCCCGAGCTCCATTAGTTGCCGCTATGCCAGAATATTGGCATTCCGTGTG
CAACAAATTTGGTGGCGCCATGCCGCGAATGGCGGTTTTAGCTCCGCCGG
AAGTCAGTAGCCGGAAATTGAGTCGTTTGCGAGGGCAGCTAATGAAATCC
CAGCGAAAAAGCGCTTCGATTCAGAGCTTCATACCAAACTACGGACTGCA
GCAGCATCCTCAAATGCAATTTCAAAGGGGCTATCAAAACGCCAGCAATG
GATCCTATCCAAGTCGAAGTGTTTCTAAGGCAGCTCTGCTGACACCCGGT
TGCATCTTAGCTGCTTGTCAAAATCAAGGCTACGGTGGTGTTCCAGCAGT
GGGAGTTGCATCCGCGTCGCAGCAGCAACATCTTCAGTTGAATCAAGGAA
ATTTGTTCAACTATCCGGGTGCAGTTAGTCCTTTGCAGTGGCAACAACAG
CAGTATCAAGTGCAGCAGCAACACAAGCAATTTCTACTGCAGCAGCAACA
GCAGCTGAAGGCAGCACCTGTTGGCATTCTGAAGAATTCTTCAAGAACTG
GAGCTGGTCAGCAGCTCAATGGGGATTACTTTGCTGCCAGTCCTCCTCCA
AAAACGAAGAAAGTGACAATCAGGAGCACATCTCCCACCCCCACCTCCAC
ATATCAAAAACCCATAGTGGAGAAAATTAAACCTTTGCCTGATATTCCGC
CAAAGCCAAATAAGAAATCCAAACTAAATACACTGAGAAAAGAGCGTCAG
CAACTAGAGCAGTTGCAACTGCAACGTGAGCTACTCAAACAGCGAGAATC
TATTCAGAATCAAAGAAAACAATTGAAGCGAGGGCATCAAAACCAAAAGG
ATTCGTGGAATCAGAAAACCCATCTGGAACCTAATACATGTGCAAGCTTC
AATTTCGGAAAATTAGCAGATCGTTTTATAAAAGGCCTCAGTTGCGATTC
AGATACAGAGACTCCCATGTTTACGGCAGCCAATGCTAAAATCAAGCCAC
TTAATCAAGGACATGATAAACCACATTCAATAAACTTTTCCTATGAGGGC
AACACACTGGAGAAAAAACCCGAGTTGAAGGCCAAGCCTAAAAAGTTGGA
TTTGTCCAACAAGGAGAGTAAGACATCATCGACAGACTTGCTTGATCGCG
TTTCCAAAGAATTTGATTTGGAAATTGATAGCAGCACAATTACGCTGACT
ACAGAGCAGAATCAGTCAAAACCGCCATATCAAAGTCGCACTTCTTTGAC
CGACAAGGCTACGAATACTAGATCATCAGACCCTCTGAAAAAGTATCTAA
AGCCTGGTCCACAAAAAGCCACATCGACTACGTCAGCAACTAGTAAAGGA
TCGCGGAAAATGAACATCAACGAGCTGTTGCGAAACGAAAAAGTCAAGGG
GCTGGATGACAATCCCACGTGGCAATCGCTAATGCAACTGGTTGCTCATA
TGTGCGAGACCAAGGAGAGCGAGAAGGTCGATAGGGAGCAAAAGAATCGA
TTGCTGGCAGGATCTGGTGCCGATGGTCTTCAGAAGCAATATTCCGTATA
CCTAATGGTTACCTCTGATGAAGAAGACGACGACAACGACGATAGAACTT
TCACCAAGACCAATGATGAACAGAAGGGCATTGATCTCAAATTGGGTAAC
CATCAAGGGATTCATGGGGGGAACGAGTACGTCCAGCGGTGTAGCAATGT
CTACGAAGCGGAGCATCCGAGGCTCATTCGCCACAAACGCTCGAGGAAGA
GATTGAATCCCCGCCTGCGTGATCTTTCCATACCCTATCCCAATACGCAG
ACTCAGTTACCAATGAGAAGACCACTCCACTGGCCCAAGCCGGATTACTC
CAAGACACAGGGTCGTTCGAATCGTACTCGAAGTCCATCACGTGCTCGAT
CCTACTCCTCAGCCAAGAAGGTTGTGGCCAAGCGAAGTCAGAGGTCCTTG
AGAGCAACGCTCGACGAGAAGCGAAGCTGGCGTTTGTGGCAGGATCTTCC
GATGACCGCCAAAGCTCTGAATAAGGCTTATAGCCGCATGCTGAACCTAT
CAGGAGCTATCCGAAACTCCGCGGATATAGCAAGCTTTCTAGACCAT
BO24395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44433-RA | 2166 | CG44433-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44433-RA | 2491 | CG44433-RA | 159..2322 | 16..2179 | 10820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18684811..18686617 | 1822..16 | 9035 | 100 | Minus |
| 2R | 25286936 | 2R | 18684399..18684758 | 2179..1820 | 1800 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6866 | 535..621 | 200 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..6914 | 535..618 | 165 | 67.9 | Plus |
BO24395.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:09:41 Download gff for
BO24395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15086-RE | 160..2322 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:17 Download gff for
BO24395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44433-RA | 160..2322 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:35 Download gff for
BO24395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44433-RA | 160..2322 | 17..2181 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:35 Download gff for
BO24395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18684397..18684756 | 1822..2181 | 99 | <- | Minus |
| 2R | 18684812..18686616 | 17..1821 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:17 Download gff for
BO24395.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14571902..14572261 | 1822..2181 | 99 | <- | Minus |
| arm_2R | 14572317..14574121 | 17..1821 | 100 | | Minus |
BO24395.pep Sequence
Translation from 16 to 2197
> BO24395.pep
MVRRRVLTNSAKQASMNAYQQLWQQQQFARAPLVAAMPEYWHSVCNKFGG
AMPRMAVLAPPEVSSRKLSRLRGQLMKSQRKSASIQSFIPNYGLQQHPQM
QFQRGYQNASNGSYPSRSVSKAALLTPGCILAACQNQGYGGVPAVGVASA
SQQQHLQLNQGNLFNYPGAVSPLQWQQQQYQVQQQHKQFLLQQQQQLKAA
PVGILKNSSRTGAGQQLNGDYFAASPPPKTKKVTIRSTSPTPTSTYQKPI
VEKIKPLPDIPPKPNKKSKLNTLRKERQQLEQLQLQRELLKQRESIQNQR
KQLKRGHQNQKDSWNQKTHLEPNTCASFNFGKLADRFIKGLSCDSDTETP
MFTAANAKIKPLNQGHDKPHSINFSYEGNTLEKKPELKAKPKKLDLSNKE
SKTSSTDLLDRVSKEFDLEIDSSTITLTTEQNQSKPPYQSRTSLTDKATN
TRSSDPLKKYLKPGPQKATSTTSATSKGSRKMNINELLRNEKVKGLDDNP
TWQSLMQLVAHMCETKESEKVDREQKNRLLAGSGADGLQKQYSVYLMVTS
DEEDDDNDDRTFTKTNDEQKGIDLKLGNHQGIHGGNEYVQRCSNVYEAEH
PRLIRHKRSRKRLNPRLRDLSIPYPNTQTQLPMRRPLHWPKPDYSKTQGR
SNRTRSPSRARSYSSAKKVVAKRSQRSLRATLDEKRSWRLWQDLPMTAKA
LNKAYSRMLNLSGAIRNSADIASFLDH
BO24395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44433-PA | 721 | CG44433-PA | 1..721 | 1..721 | 3749 | 100 | Plus |
