BO24408.complete Sequence
1309 bp assembled on 2010-05-18
GenBank Submission: KX796970
> BO24408.complete
GAAGTTATCAGTCGACATGGAATCCATGGAGGTTGATGAGTCTGCTGCCC
AGCTCTACGTTCGCACGCCGGAGGATGTGAAGGCCATTGTGAAGCATGCG
AAACTGGACGAGCGCCAGTTGACCCAACTCACCCAGGCTCTGTACTTTCC
CTCGGCGGACGTGGATTCGGACAATCTGCGCCTTCTGGAGCTCGATGGGC
ACATGCTTGGACAAATCCGCGACGGCCAGACGCTATATTTCAAGGGTGGC
CAGAACGAGAAGCTGGTGCTGTGCACCGATGAGCGAACGTACGACGTGAA
GGGCGCGGAAATATCCAATAGCCTTTTGCTGGTACCGGACCTCAAGTTTG
CCGCCGCCACCAGCACCTCGCCGCTGAAGAGTCCGCGCACTGGCAACGCC
AACGCCTCCCTGGAGCGCAGCCTCAATGACAGCACGGAGGATGAACTGGA
AGTGCCGCGAACTCTGGAGCAGCGGCCGGTGCTCAAGGTGTTCCACGAGT
ACTTCGAGTGCCGCGAGATAAAGCCGCGCTTTCGCAAGCTGGGTGAACTA
CTGCAGCTGACTCGATATTCGGGGCCGGAGAACGAGTTCTGCGTGGAGCA
GAAGCTACTCTTTACCTTTTCGCAGCTCCTGGACACGGTGCAGTGCAGCC
GCGGTCAGTTCATGGAGGGATTGAACCAATATCGAGCCATAGAACTGGAC
GGGCGAATGCGCGTGATGGAGTACGAATACGAGTATCGCATTATTAACAT
GATGCTGGGTTTGATAAGCGAAAACTCCTGGGCCTTGGACGAAGTGGAAC
GGGAGGAGACCATCAATGCACTGAAGGGCATAGCTCCAGAGGATGTTGTG
GCTGGGCTGTTTGATATCTATACCATTCCCAGTGAACGTTGCCCGGGCAA
GTTTGAGTACCAGGAGTCCTTGGTCTCCCGCATTGTGGCACAGAACATTC
TTCAGCCGGGTTTGCGCTTTCGCAACGAGGAGTTCATGCGCACCTGGCAG
GAGGTACTGCCCGAGGGCATGTCCTGCGACTTAAAGTACCTACGAGGTCT
GGGCATTTGCGACAAGGAGGGAGCGCAGCCTTGCATACGCTCCCTGGCAG
AGGAGTTACTGCCCACCAATATAAGCGATCGCATGCGGGCGCTATTTAAG
ACTAAAAAGAGATGGACGATGGAGGAAATGGAACCGTACATAGAGTGCTT
TACCACCCCAAACTTGTCCGTTTCCACACTATTGGCCAAGCACGCTCGCT
CATTGACCGATGGAGGTGTGCGATACTTTGTTTCAAAGCATGCAAGCTTT
CTAGACCAT
BO24408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11788-RA | 1278 | CG11788-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11788-RA | 1429 | CG11788-RA | 93..1369 | 15..1291 | 6385 | 100 | Plus |
| CG9143-RA | 2708 | CG9143-RA | 2599..2695 | 1291..1195 | 485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20274788..20275929 | 55..1196 | 5710 | 100 | Plus |
| 2R | 25286936 | 2R | 20275986..20276082 | 1195..1291 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 20274689..20274728 | 15..54 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:39:53 has no hits.
BO24408.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:05 Download gff for
BO24408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11788-RA | 6..1280 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:32 Download gff for
BO24408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11788-RA | 95..1369 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:40 Download gff for
BO24408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11788-RA | 95..1369 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:40 Download gff for
BO24408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20274691..20274728 | 17..54 | 100 | -> | Plus |
| 2R | 20274788..20275927 | 55..1194 | 100 | -> | Plus |
| 2R | 20275986..20276082 | 1195..1293 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:32 Download gff for
BO24408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16162196..16162233 | 17..54 | 100 | -> | Plus |
| arm_2R | 16162293..16163432 | 55..1194 | 100 | -> | Plus |
| arm_2R | 16163491..16163587 | 1195..1293 | 97 | | Plus |
BO24408.pep Sequence
Translation from 16 to 1309
> BO24408.pep
MESMEVDESAAQLYVRTPEDVKAIVKHAKLDERQLTQLTQALYFPSADVD
SDNLRLLELDGHMLGQIRDGQTLYFKGGQNEKLVLCTDERTYDVKGAEIS
NSLLLVPDLKFAAATSTSPLKSPRTGNANASLERSLNDSTEDELEVPRTL
EQRPVLKVFHEYFECREIKPRFRKLGELLQLTRYSGPENEFCVEQKLLFT
FSQLLDTVQCSRGQFMEGLNQYRAIELDGRMRVMEYEYEYRIINMMLGLI
SENSWALDEVEREETINALKGIAPEDVVAGLFDIYTIPSERCPGKFEYQE
SLVSRIVAQNILQPGLRFRNEEFMRTWQEVLPEGMSCDLKYLRGLGICDK
EGAQPCIRSLAEELLPTNISDRMRALFKTKKRWTMEEMEPYIECFTTPNL
SVSTLLAKHARSLTDGGVRYFVSKHASFLDH
BO24408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11788-PA | 425 | CG11788-PA | 1..425 | 1..425 | 2193 | 100 | Plus |
