BO24418.complete Sequence
1192 bp assembled on 2010-05-18
GenBank Submission: KX794820
> BO24418.complete
GAAGTTATCAGTCGACATGCCAACATTAAAGGACGTTGAGGAGGCCATTA
GAGGATTGAGACTCATTCAGTGGACTTATTCACTGCCAACTGCCGAAATG
GCCAAGGGAGTTCTTCAGGACATCCATCACAATACATCGCTGGATGGAAT
GCAGTGTATTACGATTGCCAGGCACATGGTAAATTATAAGGACTTTATTC
GTGCCAAGGAGTGGTTGATGGTAGGTTTAAAGATGTACGAGGCAGATGAA
GAAATCGAGTATATCTATTCCCAACTCGGAATGCCCTTGGTCGATTTTTA
CGAGCTTTTCGTCGAGATTCAAGATGAACTTGGTTCTCGATACTTGGCCA
TGAGTGAACTGCAACTCGCTATTAAGAATTGGCCGGAAAAGGTCAGTCTG
CAAAGAGCCCTTTCTCGGCTAAAGATGAATATTCGCATTGGCAAGGAGCC
AGCGGAAAAGAAGAATAAGTCCAAAAGAGTCTATAAGAAATGCTGCAGTT
CGGAATGTCGACCTACCGCGAAACTTTATTGCTTGTACAAAACGACATCC
TCGTATTTCCTTCGATTGGCCCCTCTGAAGATGGAACTGCTGTCCCTCGA
TCCCTACATGGTGCTCTTTCATGATGTAGTTTCTGACAAGGACATTGTCA
GCATTAGGAACCTGACTAAGGGCAAACTTGCCCGAACCGTTACCGTGAGT
AAGGACGGAAATTATACAGAGGACCCCGATCGCACCACCAAGGGTACATG
GCTAGTTGAGAATAACGCATTGATCCAGAGATTATCGCAACTGACACAGG
ATATGACTAATTTCGACATCCACGACGCGGACCCCTTTCAGGTTTTGAAC
TACGGAATAGGCGGTTTCTACGGCATCCACTTTGACTTTTTAGAGGATGC
AGAATTGGACAACTTTTCGGATCGCATCGCCACTGCCGTGTTTTATTTGA
GTGACGTGCCCCAAGGTGGGGCCACCATATTCCCGAAACTCGGACTCTCC
GTGTTCCCCAAAAAGGGCTCAGCACTTCTGTGGTACAATCTTGATCACAA
GGGCGATGGTGATAATAGAACAGCCCACTCAGCTTGTCCCACAGTTGTGG
GTTCTAGATGGGTCATGACCAAGTGGATAAATGAAAGGGAACAAATTTTT
AGGAGGCCCTGTTTGACAAGCATTGCAAGCTTTCTAGACCAT
BO24418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15539-RB | 1530 | CG15539-PB | 370..1527 | 17..1174 | 5790 | 100 | Plus |
| CG15539-RA | 1161 | CG15539-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
| CG15539-RC | 1527 | CG15539-PC | 370..1524 | 17..1174 | 5710 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15539-RB | 1565 | CG15539-RB | 372..1529 | 17..1174 | 5790 | 100 | Plus |
| CG15539-RA | 1615 | CG15539-RA | 422..1579 | 17..1174 | 5790 | 100 | Plus |
| CG15539-RC | 1562 | CG15539-RC | 372..1526 | 17..1174 | 5710 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30507064..30507509 | 459..904 | 2230 | 100 | Plus |
| 3R | 32079331 | 3R | 30506629..30506830 | 133..334 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 30507659..30507824 | 947..1112 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 30506887..30507015 | 332..460 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 30506460..30506575 | 17..132 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 30507879..30507941 | 1112..1174 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 30507562..30507603 | 905..946 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:40:40 has no hits.
BO24418.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:10 Download gff for
BO24418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15539-RB | 372..1529 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:50 Download gff for
BO24418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15539-RA | 422..1579 | 17..1176 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:56 Download gff for
BO24418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15539-RA | 422..1579 | 17..1176 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:56 Download gff for
BO24418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30507659..30507824 | 947..1112 | 100 | -> | Plus |
| 3R | 30507880..30507941 | 1113..1176 | 96 | | Plus |
| 3R | 30506629..30506828 | 133..332 | 100 | -> | Plus |
| 3R | 30506888..30507015 | 333..460 | 100 | -> | Plus |
| 3R | 30506460..30506575 | 17..132 | 100 | -> | Plus |
| 3R | 30507066..30507509 | 461..904 | 100 | -> | Plus |
| 3R | 30507562..30507603 | 905..946 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:50 Download gff for
BO24418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26332351..26332550 | 133..332 | 100 | -> | Plus |
| arm_3R | 26332182..26332297 | 17..132 | 100 | -> | Plus |
| arm_3R | 26332610..26332737 | 333..460 | 100 | -> | Plus |
| arm_3R | 26332788..26333231 | 461..904 | 100 | -> | Plus |
| arm_3R | 26333284..26333325 | 905..946 | 100 | -> | Plus |
| arm_3R | 26333381..26333546 | 947..1112 | 100 | -> | Plus |
| arm_3R | 26333602..26333663 | 1113..1176 | 96 | | Plus |
BO24418.pep Sequence
Translation from 16 to 1192
> BO24418.pep
MPTLKDVEEAIRGLRLIQWTYSLPTAEMAKGVLQDIHHNTSLDGMQCITI
ARHMVNYKDFIRAKEWLMVGLKMYEADEEIEYIYSQLGMPLVDFYELFVE
IQDELGSRYLAMSELQLAIKNWPEKVSLQRALSRLKMNIRIGKEPAEKKN
KSKRVYKKCCSSECRPTAKLYCLYKTTSSYFLRLAPLKMELLSLDPYMVL
FHDVVSDKDIVSIRNLTKGKLARTVTVSKDGNYTEDPDRTTKGTWLVENN
ALIQRLSQLTQDMTNFDIHDADPFQVLNYGIGGFYGIHFDFLEDAELDNF
SDRIATAVFYLSDVPQGGATIFPKLGLSVFPKKGSALLWYNLDHKGDGDN
RTAHSACPTVVGSRWVMTKWINEREQIFRRPCLTSIASFLDH
BO24418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15539-PA | 386 | CG15539-PA | 1..386 | 1..386 | 2031 | 100 | Plus |
| CG15539-PB | 509 | CG15539-PB | 124..509 | 1..386 | 2031 | 100 | Plus |
| CG15539-PC | 508 | CG15539-PC | 124..508 | 1..386 | 2014 | 99.7 | Plus |
| PH4alphaNE2-PA | 542 | CG9720-PA | 129..530 | 1..388 | 676 | 36.5 | Plus |
| PH4alphaPV-PA | 525 | CG31015-PA | 132..521 | 1..383 | 666 | 38.1 | Plus |
