BO24419.complete Sequence
1732 bp assembled on 2010-06-28
GenBank Submission: KX794496
> BO24419.complete
GAAGTTATCAGTCGACATGCCAGATATGAAGACACCACTGCTTGGCTTTC
TTACTACAGTGATCGCAATCTCTGCAGGTGCTCCCGACTGGCAGTTGCCC
TGCGATTTGCGCGAAACGAGCCATGGAAGCGTGTGTGTCTGCAACAGCAC
CTACTGCGATTATCTGGAACCGCCCCAGCTCACTGATATCTCGCAGATTG
TGGTGATTAGCTCCAGCAAGGATGGCTTACGCTTCAAGAAGACGACAGGG
GATCTCTCGAAAAAGAAACCCATAACAATAGATGACAAACAGTTCACCGA
TGAGAACTTCAAGGCAGATGCAATTGTTGTGGATCAGGAGAGGGCCTGGT
TGCAGTTGGCCAACATTCCCCAAAGCCTGTTTATTAATGCCAGCATTAAG
ACATATCGCATATTCGTGAAACGAGAGCAGAGTTTTCAAAATGTCTCCAT
TTTTGGTGGGGCATTTACAGGAACAGTCTCGTACTTACTCAAAGAACTTC
CGGTGGAGCTACAGGATCATGTCTATAGATCCTATTTTCATCCGGTTGGA
ATTGCTTACAACACTATACGAATGTCCATTGGCGGTTCCGACTTTGATAT
GGAACCCTGGGCATACAATGAATTGCCTCTTCATGATCCGAAATTGAGCA
ACTTTACCGAACTCGATCCGCGGGATCTGCAGAAAGTGGAACAGTTGAAA
CGCCTTAAGATCATCGGTAAAGTAGATTCTCTGAAAATCATGGGCGCTGC
CTGGAGTGCTCCAACCTGGATGAAGAGCAATAATCGCTGGACAGGATTCG
GGCAGCTGAAATCGGAATACTATCAAACGTGGGCCCTCTATCACCTCAAA
TTTCTCGAACTCATGCGGTCTAAAAATATGCCGATTTGGGCCATATCCAC
TGGCAATGAGCCGTTAAACGGCGTCATTGGCTTCTTTTTTGTACACTTCA
TGAGCATGGGCTGGACGCCCTGGCAGCAGGCTATCTGGCTGAACGACAAT
CTGGGCCCGACCATCAGAAACTCGGCGGAGAGCAAGGTGCTCATCTTTGG
CAACGACGATCAGCGGTACACCTACCCAACGTGGTTCCGAAAGATGCGCT
CCTCCCGCAACAATTCGCTGAACTACTTGGATGGCCTAGCTGTTCACTGG
TACTGGGATGAACTGATAGGACCACAACTCATCGACCAGGCACATACGGA
TATGCCCAATAAGCTGCTATTGAACACGGAGTCCTGCATCGGTGATAAGC
CATGGCAGACCCATGGTCCCGAGCTGGGCAGCTGGCAGCGTGGTGAAAGC
TATATGAGGGCCTATACCCAGGATCTGACGCACAACTTCAACGGCTGGCT
GGATTGGAATCTCGTGCTGGACGAACAGGGCGGTCCGAACTACGTTAAGA
ACTTTGTGGATGCTCCGATTATTGTGAATGCCACGAGTCGTTCTGAGATA
TACAAACAGCCGATTTTCTATGCCATAGGCCACTTCTCCAAGTTTCTGCC
GCCGGACTCCGTGCGCATCGAGACGCGGATCGAGAACCAGAGCAATCCCT
TCACCCAGCTGAGTGTTGTTGGCTTCCAGCGACCAGACGGCAGTGTGGCG
TTGATAATCTACAATGGCCAGAACCTGCCGGTGGACGTGACTCTCGATGA
TAGCCAGCGTGGAGCGATCCAGCTTCGCCTGCCGCCGCGCTCCTGGCACA
CGGTGCTCTACAAAGCAAGCTTTCTAGACCAT
BO24419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31414-RC | 1701 | CG31414-PC | 1..1698 | 17..1714 | 8490 | 100 | Plus |
| CG31414-RB | 1701 | CG31414-PB | 1..1698 | 17..1714 | 8490 | 100 | Plus |
| CG31148-RA | 1686 | CG31148-PA | 868..1007 | 884..1023 | 190 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31414-RC | 2335 | CG31414-RC | 30..1731 | 13..1714 | 8495 | 99.9 | Plus |
| CG31414-RB | 2030 | CG31414-RB | 30..1731 | 13..1714 | 8495 | 99.9 | Plus |
| CG31148-RA | 1777 | CG31148-RA | 902..1041 | 884..1023 | 190 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23706539..23707064 | 1092..1617 | 2630 | 100 | Plus |
| 3R | 32079331 | 3R | 23705779..23706101 | 527..849 | 1615 | 100 | Plus |
| 3R | 32079331 | 3R | 23705348..23705509 | 219..380 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 23704960..23705108 | 73..221 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 23705581..23705728 | 381..528 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 23706159..23706289 | 850..980 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 23706364..23706480 | 977..1093 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 23707811..23707908 | 1617..1714 | 490 | 100 | Plus |
| 3R | 32079331 | 3R | 23704833..23704899 | 13..79 | 320 | 98.5 | Plus |
| 3R | 32079331 | 3R | 23701574..23701713 | 884..1023 | 190 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:48:16 has no hits.
BO24419.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:09:54 Download gff for
BO24419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 34..1731 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:54 Download gff for
BO24419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 34..1731 | 17..1716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:17 Download gff for
BO24419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31414-RB | 34..1731 | 17..1716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:17 Download gff for
BO24419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23705581..23705728 | 381..528 | 100 | -> | Plus |
| 3R | 23704837..23704897 | 17..77 | 100 | -> | Plus |
| 3R | 23704965..23705107 | 78..220 | 100 | -> | Plus |
| 3R | 23705350..23705509 | 221..380 | 100 | -> | Plus |
| 3R | 23705781..23706101 | 529..849 | 100 | -> | Plus |
| 3R | 23706159..23706288 | 850..979 | 100 | -> | Plus |
| 3R | 23706367..23706480 | 980..1093 | 100 | -> | Plus |
| 3R | 23706541..23707064 | 1094..1617 | 100 | -> | Plus |
| 3R | 23707812..23707908 | 1618..1716 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:54 Download gff for
BO24419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19533534..19533630 | 1618..1716 | 97 | | Plus |
| arm_3R | 19532089..19532202 | 980..1093 | 100 | -> | Plus |
| arm_3R | 19531303..19531450 | 381..528 | 100 | -> | Plus |
| arm_3R | 19530559..19530619 | 17..77 | 100 | -> | Plus |
| arm_3R | 19530687..19530829 | 78..220 | 100 | -> | Plus |
| arm_3R | 19531072..19531231 | 221..380 | 100 | -> | Plus |
| arm_3R | 19531503..19531823 | 529..849 | 100 | -> | Plus |
| arm_3R | 19531881..19532010 | 850..979 | 100 | -> | Plus |
| arm_3R | 19532263..19532786 | 1094..1617 | 100 | -> | Plus |
BO24419.pep Sequence
Translation from 16 to 1732
> BO24419.pep
MPDMKTPLLGFLTTVIAISAGAPDWQLPCDLRETSHGSVCVCNSTYCDYL
EPPQLTDISQIVVISSSKDGLRFKKTTGDLSKKKPITIDDKQFTDENFKA
DAIVVDQERAWLQLANIPQSLFINASIKTYRIFVKREQSFQNVSIFGGAF
TGTVSYLLKELPVELQDHVYRSYFHPVGIAYNTIRMSIGGSDFDMEPWAY
NELPLHDPKLSNFTELDPRDLQKVEQLKRLKIIGKVDSLKIMGAAWSAPT
WMKSNNRWTGFGQLKSEYYQTWALYHLKFLELMRSKNMPIWAISTGNEPL
NGVIGFFFVHFMSMGWTPWQQAIWLNDNLGPTIRNSAESKVLIFGNDDQR
YTYPTWFRKMRSSRNNSLNYLDGLAVHWYWDELIGPQLIDQAHTDMPNKL
LLNTESCIGDKPWQTHGPELGSWQRGESYMRAYTQDLTHNFNGWLDWNLV
LDEQGGPNYVKNFVDAPIIVNATSRSEIYKQPIFYAIGHFSKFLPPDSVR
IETRIENQSNPFTQLSVVGFQRPDGSVALIIYNGQNLPVDVTLDDSQRGA
IQLRLPPRSWHTVLYKASFLDH
BO24419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31414-PC | 566 | CG31414-PC | 1..566 | 1..566 | 3052 | 100 | Plus |
| CG31414-PB | 566 | CG31414-PB | 1..566 | 1..566 | 3052 | 100 | Plus |
| CG31148-PA | 561 | CG31148-PA | 15..560 | 15..565 | 1431 | 49.2 | Plus |
