BO24420.complete Sequence
1036 bp assembled on 2010-05-18
GenBank Submission: KX798122
> BO24420.complete
GAAGTTATCAGTCGACATGGAGACAACTAAAGTGAAGGAGCCGGATCAGA
GTGGGGACTCCATCCACAAGAAACGTGATGCCATCTGGCCACTGGTTCTC
TTCTATATCCACTTAAATATCCTCGGTGTCTATGGGATTTACGTTCTGCT
CACTAGCGCGTCGTGGGCCACGATTTTATTCACCGCCCTGCTCACCCTCC
TTGGCACTTTGGGCGTGACAGTGGGCGTTCATCGTTTGTGGGCGCACAGG
ACCTTCACCGCCTCCAAGCCCCTGAAGGTTTTCCTCATGTTCTGCCAGAC
GACCGCCGGTCAGGGCTCCATCTACAGTGTGGTTCAGGCCCATCGCCTCC
ATCATGCCAAGTTCCAGCAGGACGAGGATCCCTACTACAGTAAACACAGC
TTCATGTACGCCCAGGTGCGCGGCGGTCTTCTGAAGTACTCGCCACAGCA
GGAGGAACTGCTCAAGGATGTGGATATGTCGGACCTGGAAAGTGATCCTG
TGGTCATGTTTCAGAAGAGATTCTATGTCCTGCTGTACATCTTCCTAAAC
GTACTGCTATCGGTGAACACTCCGTTCCAGTACTTTGGGGACTCCCTAGC
CACCTCCATGTTCGTGGGTTTCTGGCTGCGCAGTCTGATCGTTATCAACC
TAGGAAACCTGGTTCACTCATCCCACTTTATTTGGAGCATTCACAAGGGC
TTTAAGCCCACCGATTCCAACAGTATCTTCCTGATCACAAAGAGTTACTG
GCCGCAGTACCACTATCTGCTGCCCAGGGACTACCAGAGTGGGGAGTACG
GCAACTATGCCTCTGGCATTGGGTCTTCCATGATCCGCGTGTTCGCCGCC
CTCGACTGGGCCAAGGATCTGAAGACCATTGGATCCGTGGCCGTTCGCCA
GGGACTGACCAAGGCGGTGGAGACTGGTCGTCCGATCGTCGAGTGCATCG
AGGAACAAGTGGAGCTGGAGGAAAACGCCCTGCCCGCCAACCATTTCCTC
AACCGGGAGAAGTTTATGGCAAGCTTTCTAGACCAT
BO24420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15531-RA | 1005 | CG15531-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15531-RA | 1158 | CG15531-RA | 61..1062 | 17..1018 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30194886..30195386 | 1018..518 | 2505 | 100 | Minus |
| 3R | 32079331 | 3R | 30195447..30195656 | 519..310 | 1050 | 100 | Minus |
| 3R | 32079331 | 3R | 30196003..30196168 | 182..17 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30195779..30195910 | 314..183 | 660 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1997..2062 | 587..522 | 114 | 63.6 | Minus |
BO24420.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:11 Download gff for
BO24420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15531-RA | 61..1062 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:24:55 Download gff for
BO24420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15531-RA | 61..1062 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:59 Download gff for
BO24420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15531-RA | 61..1062 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:59 Download gff for
BO24420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30194883..30195384 | 520..1020 | 99 | <- | Minus |
| 3R | 30195447..30195652 | 314..519 | 100 | <- | Minus |
| 3R | 30195780..30195910 | 183..313 | 100 | <- | Minus |
| 3R | 30196003..30196168 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:24:55 Download gff for
BO24420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26021502..26021632 | 183..313 | 100 | <- | Minus |
| arm_3R | 26020605..26021106 | 520..1020 | 99 | <- | Minus |
| arm_3R | 26021169..26021374 | 314..519 | 100 | <- | Minus |
| arm_3R | 26021725..26021890 | 17..182 | 100 | | Minus |
BO24420.pep Sequence
Translation from 16 to 1036
> BO24420.pep
METTKVKEPDQSGDSIHKKRDAIWPLVLFYIHLNILGVYGIYVLLTSASW
ATILFTALLTLLGTLGVTVGVHRLWAHRTFTASKPLKVFLMFCQTTAGQG
SIYSVVQAHRLHHAKFQQDEDPYYSKHSFMYAQVRGGLLKYSPQQEELLK
DVDMSDLESDPVVMFQKRFYVLLYIFLNVLLSVNTPFQYFGDSLATSMFV
GFWLRSLIVINLGNLVHSSHFIWSIHKGFKPTDSNSIFLITKSYWPQYHY
LLPRDYQSGEYGNYASGIGSSMIRVFAALDWAKDLKTIGSVAVRQGLTKA
VETGRPIVECIEEQVELEENALPANHFLNREKFMASFLDH
BO24420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15531-PA | 334 | CG15531-PA | 1..334 | 1..334 | 1751 | 100 | Plus |
| Fad2-PA | 355 | CG7923-PA | 38..330 | 19..307 | 478 | 34.5 | Plus |
| Desat1-PD | 383 | CG5887-PD | 71..347 | 23..295 | 453 | 31.8 | Plus |
| Desat1-PB | 383 | CG5887-PB | 71..347 | 23..295 | 453 | 31.8 | Plus |
| Desat1-PE | 383 | CG5887-PE | 71..347 | 23..295 | 453 | 31.8 | Plus |
