BO24421.complete Sequence
1069 bp assembled on 2010-05-18
> BO24421.complete
GAAGTTATCAGTCGACATGGGAACTATGTCTCTAAGCGATTTCAAGGAGG
TTAGAATACCGGCACCTTGGGGTCACATCTCCGGACGTTGGTATGGTAAT
CGAACGGAGCGACCGATCCTGGCTATTCACGGATGGCTGGACAATCTGGG
AACCTTCGATCGGCTGATTCCCCTGCTTCCCGACTACATAGGCGTGTTGT
GCATCGATCTTCCCGGACATGGAAGATCCGCTCACATTCAGCCTGGAATG
CACTACGCCGTCAACGATTACGTGTTAATCATTCCTCGAGTGATGAAGGA
ATACGGCTGGTCAAAGGTCTCATTGATGGGCCACTCATTGGGTGGCATCA
TTAGCTTCGTTTACACATCTTTGGCACCAGATACAGTGGACATGGTCATC
TCACTGGACATATTGCTGCCCTTGTCAAAGGACCCCAAAACGGTTATTAA
ATATTTGAACCACAGTTTGGATAAGCACCTGGTGGAAGAGGAACGTCAGG
TGGAGGGAAACCTGCACGAGCCTCCCTCCTACACCCTCGCACAGCTGACA
CAGGTCCTCGCCAAAGGAAGTGACAACTCGGTGACGCCAGAGTTTGCCCA
ACACTTGCTTCACCGGCAGGTGTCGAAGTCGCAACTCTATCCAGACAGAT
TCTTCTTCTCCAGAGATGGACGAGTTAAATACTACAGCCATTTGCAAATG
GAACCCGAATTTGGTGAGGCGTTGGTGAAGCGAATTCGGAGAATACCCTG
TTTGATCATTAAAGGGTCAAAGTCTGATTTTGTGGAAGCTAGAACCGAGA
AGGCGGTTGCCATCTTACGTCAAAACAATCCGCACTTCGAGTTCTACGAG
GTGGAGGGAGGTACCCACCACGTTCATCTTCATGCTGCCGAGGAGTGTGC
CCGATACATAGTGCCCTTCATCCGACACCACCGACCCCCGGCACTCACTT
CTTGGTCCTTGAGTGGCAAGGAGGAGCACCTAAGTGCCGAGGAAAAGCGG
CGACAGCAAGAAAGATTCTTTAAAAGGAGCACACACGCTAAGAGCAAGCT
GGCAAGCTTTCTAGACCAT
BO24421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15879-RA | 1029 | CG15879-PA | 1..1026 | 26..1051 | 5100 | 99.8 | Plus |
| CG5704-RB | 1008 | CG5704-PB | 1..408 | 17..424 | 720 | 78.4 | Plus |
| CG5704-RA | 1008 | CG5704-PA | 1..408 | 17..424 | 720 | 78.4 | Plus |
| CG5704-RB | 1008 | CG5704-PB | 799..908 | 827..936 | 250 | 81.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15879-RA | 1389 | CG15879-RA | 126..1165 | 12..1051 | 5155 | 99.7 | Plus |
| CG5704-RB | 1289 | CG5704-RB | 126..533 | 17..424 | 720 | 78.4 | Plus |
| CG5704-RA | 1220 | CG5704-RA | 126..533 | 17..424 | 720 | 78.4 | Plus |
| CG5704-RB | 1289 | CG5704-RB | 924..1033 | 827..936 | 250 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2167774..2168784 | 1051..41 | 5025 | 99.8 | Minus |
| 3L | 28110227 | 3L | 2173590..2173948 | 420..62 | 715 | 79.9 | Minus |
| 3L | 28110227 | 3L | 2170309..2170669 | 424..64 | 680 | 79.2 | Minus |
| 3L | 28110227 | 3L | 2172332..2172676 | 399..55 | 405 | 74.5 | Minus |
| 3L | 28110227 | 3L | 2169809..2169918 | 936..827 | 250 | 81.8 | Minus |
| 3L | 28110227 | 3L | 2173083..2173192 | 936..827 | 235 | 80.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:41:04 has no hits.
BO24421.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:12 Download gff for
BO24421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15879-RA | 1..1026 | 26..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:00 Download gff for
BO24421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15879-RA | 131..1165 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:01 Download gff for
BO24421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15879-RA | 131..1165 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:01 Download gff for
BO24421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2167771..2168784 | 41..1053 | 99 | <- | Minus |
| 3L | 2168955..2168978 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:00 Download gff for
BO24421.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2167771..2168784 | 41..1053 | 99 | <- | Minus |
| arm_3L | 2168955..2168978 | 17..40 | 100 | | Minus |
BO24421.pep Sequence
Translation from 16 to 1069
> BO24421.pep
MGTMSLSDFKEVRIPAPWGHISGRWYGNRTERPILAIHGWLDNLGTFDRL
IPLLPDYIGVLCIDLPGHGRSAHIQPGMHYAVNDYVLIIPRVMKEYGWSK
VSLMGHSLGGIISFVYTSLAPDTVDMVISLDILLPLSKDPKTVIKYLNHS
LDKHLVEEERQVEGNLHEPPSYTLAQLTQVLAKGSDNSVTPEFAQHLLHR
QVSKSQLYPDRFFFSRDGRVKYYSHLQMEPEFGEALVKRIRRIPCLIIKG
SKSDFVEARTEKAVAILRQNNPHFEFYEVEGGTHHVHLHAAEECARYIVP
FIRHHRPPALTSWSLSGKEEHLSAEEKRRQQERFFKRSTHAKSKLASFLD
H
BO24421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15879-PA | 342 | CG15879-PA | 1..342 | 4..345 | 1816 | 100 | Plus |
| CG5704-PB | 335 | CG5704-PB | 1..335 | 1..345 | 1228 | 65.5 | Plus |
| CG5704-PA | 335 | CG5704-PA | 1..335 | 1..345 | 1228 | 65.5 | Plus |
| CG15820-PA | 308 | CG15820-PA | 7..303 | 9..308 | 1074 | 65.1 | Plus |
| CG5707-PA | 357 | CG5707-PA | 21..331 | 11..322 | 877 | 49.7 | Plus |
