BO24426.complete Sequence
943 bp assembled on 2010-05-18
GenBank Submission: KX797938
> BO24426.complete
GAAGTTATCAGTCGACATGCATCTTCCGGCTCTTGATGACTTCTATCAGC
GTCTTCTGTTTCTGCTGCCGTTCGCCGCAAATTTCAGATCGACTGATTTC
GACTACAAATCCCCGGAGAGGTGGCCGGAAAAATACCCAAATTGTGGTGG
ATCAGAACAGTCGCCCATTGCGATTAGCAGACGCAAGGCGATACCCCTTA
ACTTGCCGCCTCTGATTTTCGCACTTTATGATGAGTTCTTCGATGAGCTG
GTGACAATTAGGAATAGTGGACACACAGTGGAATTTAAGGTTCCGACGAC
GATCTATGGCGTGAAGCCCTACGTAACAGGAGGTCTCTTGCGGGACTGCT
ACGATGCCGAGGCCGTGCATTTCCATTGGGGATCCCCCGAGAGCAAGGGC
TCGGAGCACCTGCTCAATGGACGCCGCTTTGATCTGGAAATGCACATAGT
CCATCGGAACACAAAGTATTTAAACTTGGAGGAGGCTGTTAAGTACAGCG
ATGGCGTTACAGTACTGGCGGTGCTCTTTAAGGTTGTTCGATCGGGGCCA
TTCTTTTATCAGCCCGGACTCAGTGAAATCTTTAGTTCCCTCCTCCATTT
GGGCAACTTTAATGCCAGCTACACTGTGCAGGAACGGCTCACCCTGGGAT
CCTTGCTGGGATCTCTTGACAGGGGAAACTTTTACACGTACAAGGGCTCC
CTAACGACGCCACCATGCTCACCGGTGGTTCAGTGGCACGTGTTCGGTGA
GGTCCTTCCCATTTCGCACCAGGATCTGCCCAAATTCTGGAACCTCCGAG
ATGAGCGCGGTCGGCCGTTGCTAAAGAATTTCCGGCCACTACAATCGCAG
GAGAATCGACTGATATTTCACCGTCAACATATAGTGCCGCTGCAGCAGGA
GCATCTCCAAGAACTGATATGGCTAGCAAGCTTTCTAGACCAT
BO24426.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5379-RB | 912 | CG5379-PB | 1..909 | 17..925 | 4545 | 100 | Plus |
| CG5379-RA | 912 | CG5379-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5379-RB | 1471 | CG5379-RB | 445..1353 | 17..925 | 4545 | 100 | Plus |
| CG5379-RA | 1115 | CG5379-RA | 89..997 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22386607..22386990 | 925..542 | 1920 | 100 | Minus |
| 3R | 32079331 | 3R | 22387059..22387323 | 541..277 | 1325 | 100 | Minus |
| 3R | 32079331 | 3R | 22387379..22387576 | 278..81 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 22388332..22388395 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:41:26 has no hits.
BO24426.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:14 Download gff for
BO24426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 78..986 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:08 Download gff for
BO24426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 89..997 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:09 Download gff for
BO24426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5379-RA | 89..997 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:09 Download gff for
BO24426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22386603..22386990 | 542..927 | 99 | <- | Minus |
| 3R | 22387059..22387321 | 279..541 | 100 | <- | Minus |
| 3R | 22387379..22387576 | 81..278 | 100 | <- | Minus |
| 3R | 22388332..22388395 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:08 Download gff for
BO24426.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18212325..18212712 | 542..927 | 99 | <- | Minus |
| arm_3R | 18212781..18213043 | 279..541 | 100 | <- | Minus |
| arm_3R | 18213101..18213298 | 81..278 | 100 | <- | Minus |
| arm_3R | 18214054..18214117 | 17..80 | 100 | | Minus |
BO24426.pep Sequence
Translation from 16 to 943
> BO24426.pep
MHLPALDDFYQRLLFLLPFAANFRSTDFDYKSPERWPEKYPNCGGSEQSP
IAISRRKAIPLNLPPLIFALYDEFFDELVTIRNSGHTVEFKVPTTIYGVK
PYVTGGLLRDCYDAEAVHFHWGSPESKGSEHLLNGRRFDLEMHIVHRNTK
YLNLEEAVKYSDGVTVLAVLFKVVRSGPFFYQPGLSEIFSSLLHLGNFNA
SYTVQERLTLGSLLGSLDRGNFYTYKGSLTTPPCSPVVQWHVFGEVLPIS
HQDLPKFWNLRDERGRPLLKNFRPLQSQENRLIFHRQHIVPLQQEHLQEL
IWLASFLDH
BO24426.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:51:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5379-PB | 303 | CG5379-PB | 1..303 | 1..303 | 1628 | 100 | Plus |
| CG5379-PA | 303 | CG5379-PA | 1..303 | 1..303 | 1628 | 100 | Plus |
| CG3669-PB | 298 | CG3669-PB | 6..286 | 10..286 | 622 | 43 | Plus |
| CG18673-PC | 302 | CG18673-PC | 42..299 | 29..286 | 534 | 41.5 | Plus |
| CG18672-PC | 286 | CG18672-PC | 6..285 | 10..289 | 518 | 38.7 | Plus |
