BO24447.complete Sequence
1471 bp assembled on 2010-05-18
GenBank Submission: KX795365
> BO24447.complete
GAAGTTATCAGTCGACATGCGAAAGTTTAAAAGAAAAGTTTACCGCGAAT
ATGAAAATTTCGTGCGACCCAAGACCCATGTGGAACCGGAGCCTCCAAAG
CCCATAAACTTATCGATTGAGGACTTCAATGCGCGCGGAGAGATCGCCAA
TCCCCGTGCTCCTTGTGTGGTCACCACCATCGATCCCGATTATATTAAGG
ACGCCAGTGCGCAACGTTTGGCCAGAAAATTTCGCATGAAAACGGACATC
CTACTCTTGAGGGAGATTACCCGCAATCGCTTTATGTACTATGCTACGCA
AGAACTTTTTTTGGACCGAAAACGCGAGAAGGAATACCAAGACAATGTAT
ACGAAAAGGCCGAGGAGTTTCACAAGTTTGCAGAGGAGTCGCTCAAGAAA
ATGGAAGCGGAGGAGTTTAAGAAAATGTTAGAGGCCCAAGAAAAGCTGAA
GACACTGAAGGAAAGCAAACTGAGCGAAGAGCTGAACGAGGTGAAGCTGG
AGCATCAGCGAGTGCTGATGGAAGTGCAGGAGGTCTACGGTCGCTTTCAG
TATTTACTCAAACTGATCAGCTACTTTGATGACACAGTTGAGGAGGAGCA
AACCGAGGGAGACGATGCCAGCAATAGGCTTAGCATGCCGCAGGAAATCG
TAGCCATGGAGATCACCGAACGACATCCAGCGGGTCTCGAGCAAGTGCGT
CAAGTCCAAGACTACATGGAGAAGATAGTGCGTCCGTATTTGGCAAAGCG
GAATCATCTCAATGCAGAGATTTGGATACGTGGCTATGAGAGAAATCGCT
TAAAGGTGTCCAACTACAACAGGCGCTTTTCTCAGTTGGCAATCTTGAAC
CACATCGTAGCCATCCTCCATGACAAGGCCCAGAAGACGTACGAGCGTCA
GGTGAAAGCCAATGTGTTCCTCAAGGATCCCGAGTTCCTGCAGCGACGGG
TGGCAGGTCTTCAGGAGCGTGCCAAGGGTCTATTAAATGACTTCGAGCAG
AGATACTGCAAGGACAAGCTGAATATCAAGCTAAATGCTATTGTACCAAT
TATTCTCAAGCAAATCCAAAACAAAGTTAAGCCGGAGCAAAAGCGAGAGG
TTACGCAGCCGCCATCCAAGCCAGCAGCCCAGAAGTCGTCCAAGCAATGG
CGAACACTGGAAGACATGCAGCCTCCACCACCGCCACCCAAGTCTACATA
CGCGGACGAACAGGACACGACTCTTGCCAAGGTGGAGAAAATCCAGGGCT
ACGTTTTGGAGCTCTTGGCTAAACTGGACCACATCGAACCGAGCAAGCTG
CGAAGTGTCGAGCAGCAGGTTCGACGTCGCATGGCAGCGGAGAAGGAAAT
GTCTCGCCGTGCGTTAGTCAAGCAGAACCGGCTACACAATTGGATGGCGC
ATTTCAAGAAGCATCATGATCAGCAGGTTGAGCAACGATGGAAAAATAAA
GTCGCAAGCTTTCTAGACCAT
BO24447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30120-RB | 1440 | CG30120-PB | 1..1437 | 17..1453 | 7170 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30120-RB | 2533 | CG30120-RB | 1042..2478 | 17..1453 | 7170 | 99.9 | Plus |
| CG5189-RB | 2533 | CG5189-RB | 1042..2478 | 17..1453 | 7170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18448101..18448871 | 244..1014 | 3855 | 100 | Plus |
| 2R | 25286936 | 2R | 18448927..18449365 | 1015..1453 | 2180 | 99.8 | Plus |
| 2R | 25286936 | 2R | 18447940..18448051 | 133..244 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 18447808..18447884 | 57..133 | 385 | 100 | Plus |
| 2R | 25286936 | 2R | 18447714..18447753 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:43:13 has no hits.
BO24447.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:24 Download gff for
BO24447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30120-RB | 1020..2456 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:52 Download gff for
BO24447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30120-RB | 1042..2478 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:42 Download gff for
BO24447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5189-RB | 1042..2478 | 17..1455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:42 Download gff for
BO24447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18448927..18449365 | 1015..1455 | 99 | | Plus |
| 2R | 18447714..18447753 | 17..56 | 100 | -> | Plus |
| 2R | 18447808..18447884 | 57..133 | 100 | -> | Plus |
| 2R | 18447941..18448050 | 134..243 | 100 | -> | Plus |
| 2R | 18448101..18448871 | 244..1014 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:52 Download gff for
BO24447.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14335219..14335258 | 17..56 | 100 | -> | Plus |
| arm_2R | 14335313..14335389 | 57..133 | 100 | -> | Plus |
| arm_2R | 14335446..14335555 | 134..243 | 100 | -> | Plus |
| arm_2R | 14335606..14336376 | 244..1014 | 100 | -> | Plus |
| arm_2R | 14336432..14336870 | 1015..1455 | 99 | | Plus |
BO24447.pep Sequence
Translation from 16 to 1471
> BO24447.pep
MRKFKRKVYREYENFVRPKTHVEPEPPKPINLSIEDFNARGEIANPRAPC
VVTTIDPDYIKDASAQRLARKFRMKTDILLLREITRNRFMYYATQELFLD
RKREKEYQDNVYEKAEEFHKFAEESLKKMEAEEFKKMLEAQEKLKTLKES
KLSEELNEVKLEHQRVLMEVQEVYGRFQYLLKLISYFDDTVEEEQTEGDD
ASNRLSMPQEIVAMEITERHPAGLEQVRQVQDYMEKIVRPYLAKRNHLNA
EIWIRGYERNRLKVSNYNRRFSQLAILNHIVAILHDKAQKTYERQVKANV
FLKDPEFLQRRVAGLQERAKGLLNDFEQRYCKDKLNIKLNAIVPIILKQI
QNKVKPEQKREVTQPPSKPAAQKSSKQWRTLEDMQPPPPPPKSTYADEQD
TTLAKVEKIQGYVLELLAKLDHIEPSKLRSVEQQVRRRMAAEKEMSRRAL
VKQNRLHNWMAHFKKHHDQQVEQRWKNKVASFLDH
BO24447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30120-PB | 479 | CG30120-PB | 1..479 | 1..479 | 2469 | 100 | Plus |
