BO24467.complete Sequence
1660 bp assembled on 2010-06-24
GenBank Submission: KX796934
> BO24467.complete
GAAGTTATCAGTCGACATGGTGGGTAGCCTGCGGAAGATCAAGCTCGAGC
TAGGAGGCGACAACCTGCAGTTGGCCATCTGCAAGGCGGGCTCCATATCC
TATCTGAAGCGATTCAACAAGAAGAGCGAGCCCACGTGGATGTTTGTCAC
GAGCGGCAAGGCCATCAATATCATGTTCGGCACGGATGTGCCCAAGCTGG
TGGCCATGATCACCCGAATGCTGCAGTCGACGATGGCCAAGGAAACGCAC
CTGAGCTACGAGATCACCGAGCTCCAGCCGATCGAGCTGGAGCAGCTGGA
GGTGCGCAACAAGGCGCTGCGCCTGGCCGAGGAGATCGAGCTGGCGGAGA
GCCGTCGGAAGCGGCTGGAGTACCTTCACAGCGTCACCGACTGCATCATG
GCCAACCTGCCGGACATCGGGATCACGGTCTTCGGGCCACAGGTTAATCG
CGACATGTTCAAGAAACTCTCGGAGCCGGCTGATCCGCTCAAGATTCAGT
GCAAGGACCGCAAGGTATTTACCATTCTGCCTAGCGACATCGCCACCGTC
AACTTTGCTGCGGAGAATCCACTGTCACCGGAGGTTATCGAGCAGCTCTA
CGACAAGGAGCTGCTGATGTGCTTCTGGAAGGTGGACGAGGTGCTCGGCA
CGCCACCGACCGTGCTCCGCCAATATGCCCACGAGCTGACCAAGGAGACC
ATTAAGCCGCCGGACGAGTTCAACGAGGAGGAGATCACCGTGCCGCCCAT
GATTGTGCCGCTGGAGGTGACCGTGGAGATATCTGATCCAGAGCCATCAA
CGGAGAATAGTCAGGTGCAGCCGGACGCAGTGCATCTGGCCGAGATTAGG
AGCGAAAATGTAGCGGAGGCTGAGGAAGAGACGGAGACAGAGGCGGAGGC
AGGTGCGGCACCAGAGGCCAAAACTGCTCCGGTTGCAGCTAAGAGAACCA
AGACTATTCGGATACCGCCGATTTGGGTGCCCAGTGACCAGCGCACCCAT
GCAGCGCTAATCTACACGTACTTCCGTGCCCAGACCACGACCTTCCTTCC
GCCGGATCCCGTGCCGGAGCCACCGCACATCGTGATGATCTTCGACGCCT
ACAAGAAGAAGGATCTCGCTATTCTGCTCGAGACGTGTCGCGAGGACATT
CCGCTCTATGGCTTCTTTAACGGTGACAATCCGCTGACGGCGCAATTTAT
AGCAAACTCCGTGGAGAAGTACAATGCCAAGCCGTATGTTCCTACCGACA
AGATTGTACTGAAGGTGAACAAGGTGAACAGTCCGACCATTCCCACGCTG
ATGGCCTACGGTCCCAGCTACGTTAGCGCCAACTCGGTGGTGGGCCACCA
GGAGGCCACACAGTTCTTTCCCGCCAACTACAAGTCTGCGCTGCAGGAGG
AGGAGGAACTGCACGCCGTCAAGACGGAGAAGCCCAAGAAGCGCAAGAAG
AATAAAAAGGGCGGCGATCCCGAGGAGAGCGGCAAGGCGGACGCCGGACC
GGCGGATGCGCAGATGGAGGCGGAAGAAGCGGTGAAGACCTCGCCGGAGG
AAGGCGCCTCCACCACGAGCAGTGGCGAGGACAGCTGCGAGAGTCGTCCT
GCCACAGCGGATGGCGCCAATCCCGACGCTTCGCAGGCCACAGCAAGCTT
TCTAGACCAT
BO24467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14221-RC | 1761 | CG14221-PC | 128..1758 | 12..1642 | 8140 | 99.9 | Plus |
| CG14221-RB | 1629 | CG14221-PB | 1..1626 | 17..1642 | 8130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14221-RC | 1998 | CG14221-RC | 255..1885 | 12..1642 | 8140 | 99.9 | Plus |
| CG14221-RB | 1941 | CG14221-RB | 198..1828 | 12..1642 | 8140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19619994..19620634 | 791..151 | 3205 | 100 | Minus |
| X | 23542271 | X | 19619475..19619927 | 1242..790 | 2265 | 100 | Minus |
| X | 23542271 | X | 19619184..19619391 | 1450..1243 | 1040 | 100 | Minus |
| X | 23542271 | X | 19618932..19619125 | 1642..1449 | 970 | 100 | Minus |
| X | 23542271 | X | 19620712..19620783 | 151..80 | 360 | 100 | Minus |
| X | 23542271 | X | 19620854..19620921 | 79..12 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:54:22 has no hits.
BO24467.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 11:46:20 Download gff for
BO24467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14221-RB | 203..1828 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:49 Download gff for
BO24467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14221-RB | 203..1828 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:01 Download gff for
BO24467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14221-RB | 203..1828 | 17..1644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:01 Download gff for
BO24467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19618930..19619123 | 1451..1644 | 98 | <- | Minus |
| X | 19619184..19619391 | 1243..1450 | 100 | <- | Minus |
| X | 19619475..19619925 | 792..1242 | 100 | <- | Minus |
| X | 19619994..19620633 | 152..791 | 100 | <- | Minus |
| X | 19620712..19620783 | 80..151 | 100 | <- | Minus |
| X | 19620854..19620916 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:49 Download gff for
BO24467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19512963..19513156 | 1451..1644 | 98 | <- | Minus |
| arm_X | 19513217..19513424 | 1243..1450 | 100 | <- | Minus |
| arm_X | 19513508..19513958 | 792..1242 | 100 | <- | Minus |
| arm_X | 19514027..19514666 | 152..791 | 100 | <- | Minus |
| arm_X | 19514745..19514816 | 80..151 | 100 | <- | Minus |
| arm_X | 19514887..19514949 | 17..79 | 100 | | Minus |
BO24467.pep Sequence
Translation from 16 to 1660
> BO24467.pep
MVGSLRKIKLELGGDNLQLAICKAGSISYLKRFNKKSEPTWMFVTSGKAI
NIMFGTDVPKLVAMITRMLQSTMAKETHLSYEITELQPIELEQLEVRNKA
LRLAEEIELAESRRKRLEYLHSVTDCIMANLPDIGITVFGPQVNRDMFKK
LSEPADPLKIQCKDRKVFTILPSDIATVNFAAENPLSPEVIEQLYDKELL
MCFWKVDEVLGTPPTVLRQYAHELTKETIKPPDEFNEEEITVPPMIVPLE
VTVEISDPEPSTENSQVQPDAVHLAEIRSENVAEAEEETETEAEAGAAPE
AKTAPVAAKRTKTIRIPPIWVPSDQRTHAALIYTYFRAQTTTFLPPDPVP
EPPHIVMIFDAYKKKDLAILLETCREDIPLYGFFNGDNPLTAQFIANSVE
KYNAKPYVPTDKIVLKVNKVNSPTIPTLMAYGPSYVSANSVVGHQEATQF
FPANYKSALQEEEELHAVKTEKPKKRKKNKKGGDPEESGKADAGPADAQM
EAEEAVKTSPEEGASTTSSGEDSCESRPATADGANPDASQATASFLDH
BO24467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14221-PC | 586 | CG14221-PC | 45..586 | 1..542 | 2788 | 100 | Plus |
| CG14221-PB | 542 | CG14221-PB | 1..542 | 1..542 | 2788 | 100 | Plus |
| CG18130-PA | 706 | CG18130-PA | 45..625 | 1..541 | 1267 | 44.7 | Plus |
