BO24468.complete Sequence
1675 bp assembled on 2010-06-24
GenBank Submission: KX795012
> BO24468.complete
GAAGTTATCAGTCGACATGAAGGTCTTCAGCCTAAGTCTTTTGCTGGTGG
CCGCCCTCCCTCTGATGTGCCACGCCCTTCCAGCTAGCGATAAGTCCCTT
TCCCTGGAAGACACAGATCTGGACAACGAACCGGGCGAGAGTGTAAAGGA
GTCCCAGGTGCAAAAGCGGTCCGGCAGCTTCGACTACGTGGCGCACCTGA
AGTCCGGCCTGCTGTCGGGAATTGGCCAGGCCTCCGCCTCAATCGCCTCC
GGCAGTTCCGGCGGAAGCAGCGGTGGCGGTGACAGCTACAAATCCCACGA
GATCGTTGTCCATGGCAACTCTGTGGACTACGATCCCTGGTCTTTTAAGA
AATCCGTGCTGAACACTATCTTCCAGGCGGTCAAGGCCATCACCGGCGGA
GTCACCGCACTCAAGGGTCAGCTGATCAAGGGCAGCGGCTACGCGCTGAG
TGCGGGTGGCAATCTGGTGGCCGCCGGCGGCGACAAGGTCACCGATGTGG
GCAAGTCCATCATCAACTCGGCGCACATCAACTCGCACACCTACGCCACT
AGTCACTCCTCCTCCGGCGGCGGTCTGTTCGCCAAGCTGACCTCCTTGTC
GGGCGCCTCCTCCGGCGGCAGCAGTGGGCACAAGACCGTCTCCGCACCTG
GACCCGTTGTGCATCACGAGACGATCACCACGTACGAGATACCCACTGGC
CACGCCAGCTACGGTCCGCCATCGAAGCCCCCGACCTACAGCAGCGCCAC
CCATCAGTACCTTCCGCCGGTGGGCGGGGCTAGCTACGGCGGCGGGGCGC
CCTTCAGCGTTAGCCACCCGGCGGCCTTCGAGTCGCCGCCAAGCAACTAT
CTGCCATCGGCCTATGGACAAGATGCGACCAGCGCAAATAGCAATGACTT
TAACATCTATGGCCGCCACTCAAAGCTAACGGATGAGGAAGCCCGCAAGG
CGGCGGCACAGCTCCAGGAGATCCTCAGCTTGTTGCCCAACGGGAAAACT
GAGTACACGGCCTCCAAGACAGTGGCTTTGGATACCAGTTTGCCAACGGG
TACGGGTTTGGAACAGGCAGAGGTTTATAACAGCTATGGCATACCGCTGC
CCAGTAACCTGGGCACCTTGGAGTCCCTGTCGCACACAGAGTCCATAACA
GCTGCCTATAATCCCGCCTCAAAGAATCCGGCGGATGTATACCACCAGAT
GGCCAAGCGCCCGTCCGCCGAGGAACTCTACATCCAGAAGCATCCCAATG
AGGGCTACGATTACTCGCCACCCGCAGCTGCGGCCCCGCCACCGCAAGCT
GCTGCAGATTACAGAGTGGAGAACTACCACGCCACCAAGAGCAATGCGCT
CAAGGATCTGACGCCCATTATAGCCGCCTTGGAGGTGGCCAAGCGGAAGG
GTAACAACCACGGCAGCGGACCCGTCTACTCCATCGAGAAGCAGGTGCAC
AAGCAGTCGCCCCACTTCCAGTATCTGCCGCCGGTGGTGCAAAAGTCCAA
GTACGTGTACAGTGCACCACCGCACCACCACCAAGGACACAGCGGTGGCT
ACAAGGTGCGACGCCAGGTGGCGGGCGGCAAGCACACGAAGCGCGTCTTC
CGGCCGCAGGATTACGAGATACAGGATCCACTGATGTTCAACCGCCTGCT
GGAGGTCGCAAGCTTTCTAGACCAT
BO24468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14257-RB | 1644 | CG14257-PB | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| CG14257-RC | 873 | CG14257-PC | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14257-RB | 2628 | CG14257-RB | 380..2024 | 13..1657 | 8210 | 99.9 | Plus |
| CG14257-RC | 1497 | CG14257-RC | 380..1242 | 13..875 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27081432..27082214 | 875..1657 | 3915 | 100 | Plus |
| 3R | 32079331 | 3R | 27079039..27079401 | 309..671 | 1800 | 99.7 | Plus |
| 3R | 32079331 | 3R | 27078660..27078953 | 21..314 | 1470 | 100 | Plus |
| 3R | 32079331 | 3R | 27079879..27080082 | 672..875 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:53:20 has no hits.
BO24468.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 11:46:11 Download gff for
BO24468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 371..2011 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:39 Download gff for
BO24468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 384..2024 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:59:42 Download gff for
BO24468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 384..2024 | 17..1659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:59:42 Download gff for
BO24468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27078656..27078952 | 17..313 | 99 | -> | Plus |
| 3R | 27079044..27079401 | 314..671 | 100 | -> | Plus |
| 3R | 27079879..27080082 | 672..875 | 100 | -> | Plus |
| 3R | 27081433..27082214 | 876..1659 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:39 Download gff for
BO24468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22907155..22907936 | 876..1659 | 99 | | Plus |
| arm_3R | 22904378..22904674 | 17..313 | 99 | -> | Plus |
| arm_3R | 22904766..22905123 | 314..671 | 100 | -> | Plus |
| arm_3R | 22905601..22905804 | 672..875 | 100 | -> | Plus |
BO24468.pep Sequence
Translation from 16 to 1675
> BO24468.pep
MKVFSLSLLLVAALPLMCHALPASDKSLSLEDTDLDNEPGESVKESQVQK
RSGSFDYVAHLKSGLLSGIGQASASIASGSSGGSSGGGDSYKSHEIVVHG
NSVDYDPWSFKKSVLNTIFQAVKAITGGVTALKGQLIKGSGYALSAGGNL
VAAGGDKVTDVGKSIINSAHINSHTYATSHSSSGGGLFAKLTSLSGASSG
GSSGHKTVSAPGPVVHHETITTYEIPTGHASYGPPSKPPTYSSATHQYLP
PVGGASYGGGAPFSVSHPAAFESPPSNYLPSAYGQDATSANSNDFNIYGR
HSKLTDEEARKAAAQLQEILSLLPNGKTEYTASKTVALDTSLPTGTGLEQ
AEVYNSYGIPLPSNLGTLESLSHTESITAAYNPASKNPADVYHQMAKRPS
AEELYIQKHPNEGYDYSPPAAAAPPPQAAADYRVENYHATKSNALKDLTP
IIAALEVAKRKGNNHGSGPVYSIEKQVHKQSPHFQYLPPVVQKSKYVYSA
PPHHHQGHSGGYKVRRQVAGGKHTKRVFRPQDYEIQDPLMFNRLLEVASF
LDH
BO24468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14257-PB | 547 | CG14257-PB | 1..547 | 1..547 | 2844 | 100 | Plus |
| CG14257-PC | 290 | CG14257-PC | 1..286 | 1..286 | 1473 | 100 | Plus |
