BO24481.complete Sequence
1201 bp assembled on 2010-05-18
GenBank Submission: KX797720
> BO24481.complete
GAAGTTATCAGTCGACATGAAGTCGACTGTTTGGCTACCTTTGTTGACCC
TAATTTGGAGGAGTGCCAGTGCCAACCCGATATTGGGGCTTTTCGATCCC
GCCTGCCAAGTTGTTAGGGGAGAATGTCCCAATAAAAACATATCCTTCTG
GCTGTACTCGAATTCCACCCGGGAAAACCCCATTCTGCTGGATCCCCTTG
ACCTTAATCCGTGGAACTTCCAACCGCCACGTCCCCTAAAGATACTCATC
CATGGCTACACAGGTGACCGTGACTTTGCTCCCAACTCCTACATCCGTCC
CGTGCTCCTCGATCACGAAGATGTCTACGTGATCTCCATCGACTATGGAC
CACTTGTGCGATATCCCTGCTACATCCAGGCAGTTCAGAATCTTCCCCTA
GTGAGTCGATGCCTGGCGCAGTTAATCAACAACCTGGTCGATCGAGCTAT
TGTGGCAAATGACCAGATCCATCTGATAGGCTTCAGTTTGGGTGGTCAGG
TGGCGGGGCAGACGGCCAACTATGTGAAGAGAAAGATGAAGAGGATCACT
GGTCTAGATCCTGCGAAGCCCCTCTTTATATTGGGACCAGATTCAAGAAG
ATTGGACAAAGGAGATGCCGATTTTGTGGACGTCATCCACACGGATGTTT
TCGGTCGGGGATATCTGCGCGCTGCTGGTCATGTGGATTTCTACCCAAAC
TTTGGAGCCAAACAACCTGGCTGCATGGAGGAGAACATGCAAGATCCAAG
TAGCTGCAATCACGAGAGGGCTCCTCGCTTTTACGCCGAGTCCATCAATA
CCACTGTGGGTTTCTGGGCACGGCAGTGTTCCGGTTGGTTGCTCCAACTC
CTTACACTTTGTCCCACAACAGGAGCTCAAGCTCTACTGGGCTATCACGT
CTCGGATGAGTTGAGGGGCTCGTACTTCCTCCAGACTGCAAGTAAATCAC
CCTATGCCCTCGGAAAAATGCAGGATGTGGACAATAGACAGACCCTGGCC
AAGTTCCATTTGAATTTCGATCACAACGAAATCGACGATGACTACGAACC
ACAGTTGTTGGAGGCGTTCCTCGAGCTGGAGGCGGTGAAAGTGGTGGTCA
AAATGGATGAAAGCGAATTGGATAAGCGGTTGAACTGGATTTATAGGGAG
GAAGATGAGCCTTTATCCAGAAATTTAATTAAAGCAAGCTTTCTAGACCA
T
BO24481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34447-RA | 1170 | CG34447-PA | 1..1167 | 17..1183 | 5835 | 100 | Plus |
| CG34447-RB | 1170 | CG34447-PB | 1..1167 | 17..1183 | 5835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34447-RA | 1472 | CG34447-RA | 250..1416 | 17..1183 | 5835 | 100 | Plus |
| CG34447-RB | 1263 | CG34447-RB | 41..1207 | 17..1183 | 5835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2418478..2419498 | 1183..163 | 5105 | 100 | Minus |
| 2L | 23513712 | 2L | 2419551..2419665 | 162..48 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:45:12 has no hits.
BO24481.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:24:43 Download gff for
BO24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34447-RA | 247..1413 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:26:35 Download gff for
BO24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34447-RB | 41..1207 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:18 Download gff for
BO24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34447-RB | 41..1207 | 17..1185 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:18 Download gff for
BO24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2418476..2419498 | 163..1185 | 99 | <- | Minus |
| 2L | 2419551..2419665 | 48..162 | 100 | <- | Minus |
| 2L | 2419734..2419764 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:26:35 Download gff for
BO24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2418476..2419498 | 163..1185 | 99 | <- | Minus |
| arm_2L | 2419551..2419665 | 48..162 | 100 | <- | Minus |
| arm_2L | 2419734..2419764 | 17..47 | 100 | | Minus |
BO24481.pep Sequence
Translation from 16 to 1201
> BO24481.pep
MKSTVWLPLLTLIWRSASANPILGLFDPACQVVRGECPNKNISFWLYSNS
TRENPILLDPLDLNPWNFQPPRPLKILIHGYTGDRDFAPNSYIRPVLLDH
EDVYVISIDYGPLVRYPCYIQAVQNLPLVSRCLAQLINNLVDRAIVANDQ
IHLIGFSLGGQVAGQTANYVKRKMKRITGLDPAKPLFILGPDSRRLDKGD
ADFVDVIHTDVFGRGYLRAAGHVDFYPNFGAKQPGCMEENMQDPSSCNHE
RAPRFYAESINTTVGFWARQCSGWLLQLLTLCPTTGAQALLGYHVSDELR
GSYFLQTASKSPYALGKMQDVDNRQTLAKFHLNFDHNEIDDDYEPQLLEA
FLELEAVKVVVKMDESELDKRLNWIYREEDEPLSRNLIKASFLDH
BO24481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34447-PA | 389 | CG34447-PA | 1..389 | 1..389 | 2081 | 100 | Plus |
| CG34447-PB | 389 | CG34447-PB | 1..389 | 1..389 | 2081 | 100 | Plus |
| CG34448-PA | 344 | CG34448-PA | 5..329 | 3..322 | 730 | 47.7 | Plus |
| CG14034-PC | 338 | CG14034-PC | 17..330 | 22..335 | 621 | 41.8 | Plus |
| CG14034-PB | 338 | CG14034-PB | 17..330 | 22..335 | 621 | 41.8 | Plus |
