BO24488.complete Sequence
2293 bp assembled on 2010-07-16
GenBank Submission: KX798956
> BO24488.complete
GAAGTTATCAGTCGACATGGGCCGTCGTAAGCGTGAAGACTCCTCTGACG
AGGAGGGAGACGACTGTCGCCAGAAGAGGACTGCCGAGACGACGGTGAAG
ACCGTGGAGCAGCTGATGAGAGAGCTTAGTTTCCCGGGGCACACTCCGCT
CGAATTGAAGCTGGGGAACCTGGGTTACCTGCTAGGCAAAGGGATGAGTG
TTGACCTGAAGGAGAACCTCATAAATGAGCTAGTAATATGTCTGGGCTAT
TATCCCGGACAGGCCAGTGCCTATGCCACACTTGTGGGCCTAATTAATGT
CGCAGACTTTGAATTCGGCTCCGAGTGCCTGTTGTTCATGGCGCACAAGG
TGGGAGAGTCCGTGCACATTCGCGATTGGAACAGGTGCCGTGGAGTGGTT
CACTGCATGGTGGATCTGTATCACTGCCAGGTGCTCCCGTCGTCCTATAT
TCTAAAATTGCTCGCAGCCTTCTTGAAGGACTGCGAGGCTCTGAAGGATC
CGGACGATCTGGTGGGCGTCACACCGCAGATACGACGCGATTTTCTTGCC
TACTGTGTACTATCCGCCATGCCCCTTATTGGGCGCGATTTGGAGGGGGA
GACGGCGTTTGATAAGCTGATAGTCTCACTCCAGATTTACATTAAGAAGC
GGTCCGCTCTGCACACCAACATGTTGAGTGTGTGGCCGGATTTCAATCAG
AGGGACTACCTGGAGCTGTTGTGGCAGCAGGTGGACGGTATGAGGCAGAA
CCATTGGGCCGAACCGGAGCATCAGTTGATCCCCCGACCTTACAAGTCCT
TCTCTGAGACCTTGAGCCACGGCCGAATCCACCAGCTAAGGGATTATGAT
TTGGCCGCCCATGAGGAGCGATGTCGGTATCCGCTGCCGCGTGTATGTTT
TCGCATCTTCTCCTGCGACTCTGTCGGCGAGATCCCTAATATGCCCCCGC
CGGTGAGCATCGAAAGGCATCTGCTGGAGGCCCATATTCTGGACATACTG
ATCTCTTTTCATAAGGAGAGAAAAATCTGTGCCGATAGCCTCTTGATGTA
CGCCGCCTCCAAGCCCCAGTTGCCGGTCTATTACTGCATTGTGGAGGTGA
TCTTGGGCGAGATGCTGCGGCTGCCCACCGCCAATTGGAGCACCATTGCC
TACGGATCCATTCTGGTGGAGCTGTGCAAGCGCCAACCGGACAAGATACC
CCAGGTGGTGGCCCAGGCCTTGGATATAATCTATAATCGACTGAACTCCA
TGAGCGTAGCTTGCTTCGACCGCCTGGTCAACTGGGTGTCGCATCACATC
AGCAACTTCGGGTTTAACTGCCAGTGGAGCAAGTGGGCTCAGGGTCTTCC
ATCGCCAATCGATCCGAGTGCCACCAATCTGCAGCCAAAGGTGGTTTTCC
TGAGGGAATTGCTCAAGAAGTGCTTCAGACTTTCGTACCACCAAAGAATT
AAAGATGTAGTGCCGGATATACTGGCCGATTTTCTTCCGCCGCCGGTACT
GCCGCACTTCAAGTTTGTCGACGAAACCCTTCCTGGTGCCATTTTGTCCA
AGGATCTGCTGGAGGCGATGCGCAGCCCGCAAGCAAGCCCCGAAATGATC
TCTGAAATTATTAAATCCAGCACGGGAATCGGTCCGCTGCTCAAGATCAA
CGTGTTCACCCAGAACTGTCTTCATCTGGGATCCAAATCATTTAGCCACA
CTTTCGGGATACTTCGAAAATATCACTCTGTCTTCAAGGATTTGGTTGCA
GGAGATCCAGAGAGGCAGGCCGCGGTCTTGAACGGAATCTTCGATGTGTG
GGTCGCCAGCGATCAGTACAAATTTGTGGTGACCGAAAAGCTGGTCACGG
GGTTGATAATTGAGCCCATTAGCGTTGTGCGTTGGATCTTCGGCCCATCG
ATGCGCAAGGAGCTCACCAAGATATACATTTGGGAGCTGCTCCACTCCGC
TCTCCGCCACCTGAAGCGTGTCCAACAAAAGATCGAAGTCGTGGATGTCG
ATGATCCAAGTGCATGCGATCCTGTAGTCAAAGGCATTCTGTTCACCATT
GTGCAGCGTTTTGTGAAGACTCTTTGCGGTGCTCCGTTTGCAGACGAGGG
AACAGAGGAGCATTACTGGTTCCAGTGGGTTCTGGGCAGACTGGAGGAGA
CGCTCTTTATCTATGCGGATGACTTTAGGGTGATCAATAACAAGTTGATT
AAAATGTCCGAGGATGCATCAGATCTCAGGCCTGAAATCTCAAAAACCAT
TGCGGCTTTTGTGGCTTGCGTCATGGCAAGCTTTCTAGACCAT
BO24488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7907-RC | 2262 | CG7907-PC | 1..2259 | 17..2275 | 11295 | 100 | Plus |
| CG7907-RB | 2262 | CG7907-PB | 1..2259 | 17..2275 | 11295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7907-RC | 2616 | CG7907-RC | 182..2440 | 17..2275 | 11295 | 100 | Plus |
| CG7907-RB | 2733 | CG7907-RB | 299..2557 | 17..2275 | 11295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21404098..21405509 | 17..1428 | 7060 | 100 | Plus |
| 3R | 32079331 | 3R | 21405976..21406514 | 1737..2275 | 2695 | 100 | Plus |
| 3R | 32079331 | 3R | 21405577..21405889 | 1427..1739 | 1565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:40:57 has no hits.
BO24488.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-16 10:39:18 Download gff for
BO24488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7907-RC | 172..2430 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:23 Download gff for
BO24488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7907-RB | 299..2557 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:54:58 Download gff for
BO24488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7907-RB | 299..2557 | 17..2277 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:54:58 Download gff for
BO24488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21404098..21405509 | 17..1428 | 100 | -> | Plus |
| 3R | 21405579..21405888 | 1429..1738 | 100 | -> | Plus |
| 3R | 21405978..21406514 | 1739..2277 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:23 Download gff for
BO24488.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17229820..17231231 | 17..1428 | 100 | -> | Plus |
| arm_3R | 17231301..17231610 | 1429..1738 | 100 | -> | Plus |
| arm_3R | 17231700..17232236 | 1739..2277 | 99 | | Plus |
BO24488.pep Sequence
Translation from 16 to 2293
> BO24488.pep
MGRRKREDSSDEEGDDCRQKRTAETTVKTVEQLMRELSFPGHTPLELKLG
NLGYLLGKGMSVDLKENLINELVICLGYYPGQASAYATLVGLINVADFEF
GSECLLFMAHKVGESVHIRDWNRCRGVVHCMVDLYHCQVLPSSYILKLLA
AFLKDCEALKDPDDLVGVTPQIRRDFLAYCVLSAMPLIGRDLEGETAFDK
LIVSLQIYIKKRSALHTNMLSVWPDFNQRDYLELLWQQVDGMRQNHWAEP
EHQLIPRPYKSFSETLSHGRIHQLRDYDLAAHEERCRYPLPRVCFRIFSC
DSVGEIPNMPPPVSIERHLLEAHILDILISFHKERKICADSLLMYAASKP
QLPVYYCIVEVILGEMLRLPTANWSTIAYGSILVELCKRQPDKIPQVVAQ
ALDIIYNRLNSMSVACFDRLVNWVSHHISNFGFNCQWSKWAQGLPSPIDP
SATNLQPKVVFLRELLKKCFRLSYHQRIKDVVPDILADFLPPPVLPHFKF
VDETLPGAILSKDLLEAMRSPQASPEMISEIIKSSTGIGPLLKINVFTQN
CLHLGSKSFSHTFGILRKYHSVFKDLVAGDPERQAAVLNGIFDVWVASDQ
YKFVVTEKLVTGLIIEPISVVRWIFGPSMRKELTKIYIWELLHSALRHLK
RVQQKIEVVDVDDPSACDPVVKGILFTIVQRFVKTLCGAPFADEGTEEHY
WFQWVLGRLEETLFIYADDFRVINNKLIKMSEDASDLRPEISKTIAAFVA
CVMASFLDH
BO24488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7907-PC | 753 | CG7907-PC | 1..753 | 1..753 | 3971 | 100 | Plus |
| CG7907-PB | 753 | CG7907-PB | 1..753 | 1..753 | 3971 | 100 | Plus |
| Cbp80-PB | 800 | CG7035-PB | 1..797 | 1..750 | 1092 | 32.7 | Plus |
| Cbp80-PA | 800 | CG7035-PA | 1..797 | 1..750 | 1092 | 32.7 | Plus |
