BO24490.complete Sequence
3421 bp assembled on 2010-08-10
GenBank Submission: KX797287
> BO24490.complete
GAAGTTATCAGTCGACATGAGAACTCTGCCATTTTTGTTGGCGCTGGCGC
TCTTGGCCTTTGGAGTTGCCTCATCATCATCCTCCACCACCAGCACCACC
ACATCGGTAAAGCCAAAAACCGCAAATCCAAAGGCTGAGTCCGATAAACC
CACCAAGCAGCCATCGCCATCCGCATCCCCATCGCCATCATCCAAGGCCA
CAAACACCTCAACGACCCGGCAATCTAAAGCCTTGAAGCCGGGCGAGAAT
CGTGGCAAGAGAACGCTTTATGACTTTGGAAATGCCGGTTATCTGTATCC
CGAAGTGGCATCCCGGAGGGCTGGCTACGTGGACAACGCAGCGAGCTATT
ATCCCCAAACTGGTTACTACAATGGTCAGAGTGCAGTTGCTCAATATCCC
GGAAGCTTTGGACCCGCCTATGCTCAATATCCTCAGTATTTGGAGGCTCC
AGAGCCCATCATCGAGATCATCATCAAGGATGCGAATGAAACATTAGCGG
AAGAGCCCGCGCAGCCGATTGTGACCAAGAAGAAGAAGAAGAAGGAGAAG
GTGCACGTGTTCTATGTAAACTACAAGAAGGATCAGAACAACAAGTTGCA
CCTGGAGTCGCCAATTGCTTCGCTGAACAACGACGACAACGAGGAGGAAG
AAGAGGAGGAGGAGGAAGTCATCCAGTATCCGGTTACGCCCCTGCCTCCG
GTAAAATCCACCACCCTGCGTACTATTATCCACCCGGACTCGGAGAAATA
CCACAGTAACTCCGGTATTCATGTGTCGTTCGGAGCGGAGAACAAGCACC
AGACCGGTCACATTCTGGAGGAGCATGATGCTGAGAGCATTCAGCGCCAA
GTGGTGGCACTGCCGCCTTCGGTGTCCTCCAAATCGGAGGTCAGCTATGT
GAGCAATACCCGAGCGGATTACGGAAGAGAAAACAACTTTGGATCCCGGC
CAGGACCTATTTCCAATATGCTCTTTGGCAGCAACTACCAACAGTCGGGT
ATCAACTACCAGCAGCAACAACAGCAACTGCCCACGCAGCACAGCAACAA
CTACTTCAGGCCGCCATCGGCTCTGGTGGGTCCTCCCCCCAACTACCCGA
AACCAGCGCCCCAGCAACAGGTGCAGCAGCCCCATCGCCCCAGCATCACC
CAACAGCAATTGCCCTCCACTTCCTCCCAGACCATTTTCAACAAGCTGGT
GCAACAGTCGCAGTTCTACATCAACCACAATCAGCAATACCCACAGCAGC
AACATCAACAGCAGCAGCACCAGCAGCAACATCAACAGCAGCAGCATCAA
CAGCAGCAGCACCAACAACAGCATCAGTATCAACAGCAGCATCAGCATCA
ACATCACCAGGCACCGCAGCAACATCAGCAACAGGCACCGCAGCAGCAAC
AGTATCAGAAACCTCCGCATAAGCAAGTCCAGGTGCCATTCTTTCCAACC
ATTCCACCTAAGAGCGTGACCCCTGCTCCCTACCAGCCCGTCAAGTTCCG
CCCCACACCAGCACCTGTGGCCCCGGCCAAGCCCGTACCTCTGCCCGTCA
AACTGGACAATGCGAACTACCAACAGCAGCAGCAGCAACACTATCAACCG
CAGCAGCAACAGAAATTGCCGCATCAACAGCAATCTTATCAGTTCGTTCG
TCAACCCCAATTTGTGCAGCAGCCACAGTTTGTGGTGCGTTCACCCACTC
CACCCCCAGAATACTACTCCCAGCAGAAGCAGCAGACACAGCAGCAACAT
CATCAGAGCGCTCTCAATTATTTTGACATCAAGCCATCAAAGGAGACGGA
GCTGCTTAAGTCCATTCCCAAGTTCGAGCAGCACATCACAGAGACCGTAC
AGAATCCAATTGCTACCGCACAGCAGCCACAGCAGCAATATCATCAGCAG
CAGGTGCAGCAACAACAGCAGTTTGGATATAGCAGCACGAGGAATGAGGT
GATCCACGATGTACCTGCTCCCAACTTGGGACCCACGGCTCAGCAGCACA
TCTCTGGGCACTATATAACGGCAGGATCATCTGGTGTCCAGCAGTCGCAG
CAATTCGGCAGCTTTCCCAGTGCATCTCCAACGCAGCCTCCCGTCTACGC
AGAGTCCACTCATGGCCAGAAAGTAATGGTAGTGACTCCAGTGCCCCCAT
CCTCCAACTATGTGACCTATAGCCAGTACTCTCAGACCGCTAATGAGCCT
GTGGTCCACATTAATGCTCAGTCTGCGGCTCTGCAGGCTCAGGCCAGCAC
CAACTTCGCCCAACAGCCCAGGCAGCCCGCCTCCTCGCTGATCAGTGCTC
CATCCACGGATAATTCTCCCTTCAGTGTATCCACCTACCACTCGGACGTG
TTCAAGGAGCTGGAGCAGCGCAACCAGAAGGATAAGAAGGTGTCACAGCA
GGTGCAGCAACAGGCTCAGCAAATTGCTGCAGCACCGGCTTCTGCTTCTG
TTCCCGCTCCTACCTCCACTCCTGCCACTGCTCCAAATGGCAAGGCCTCA
CAGACCTTACTCCAGTTGCCCGACGAAGTGCCAGATGATCTCCGCCAGCA
ACTTTTCTCCTCTGGTATCCTGAACAACGCCGATATCTCAATTTTGGACT
ATGACAAGCAGGGGGATATTGCCCTGGAGAACCTGCCAGCCGAGCATTTG
CAGCACTTCTATGGAGCCGGTGGTGGTGCCCAGATAGCCGAGACCAACAA
GGTTTTGACTGTGGTCAAGCCCAATGGCGATAAGGTCGCCCTCAGCGAGA
AGCAACTGGATCGTGTGAAGCAGACCAACTCACTGCCCCAGAAACAGGAT
CTCGATGTAAAGGTGGTGCGCTATGATGCCGCTCAGGGTCAGAGTGTGAG
CGATAAGTATGTGCGCACCGATGCCACCGTGGTGACCCCGGTGGATTTGG
CCGAACGGCAACAATACAACCGCTACCTCCCTCTGAAGATCAACGGAGCA
CAGTTCCCGATTCCCGATAGCGAGGAGCTGCTAGGCAAGCGCATTGTCAG
CGTGGTAGTCCTGGCTCCCGTGGAGGCCCAAAATCCTGGACAGGCGGCCG
GTGAGGCGCGGAGCGCCGATGGCAAAGAGGTCAAGTTCCTGGGCGGTGAG
CTCATCAAGACGCTGGTGAAGAAACCCACTAAAGAGAACTTTAAGCGCTG
GCTGGAGAAGGAGGCGCGTACGGATTTGGAACTGCAGTCCGTCGTGCTGC
TGGTGGCAAAATCCACAGATCCATCCGCTGAGCAGGAGATCTTTATGTAC
GAAATTGGAACGGGTAGCATAAACCGCCTCAACGGGGAGCTATCCAGCAC
GTTTGTAAACGTGGCCGAGGAGAACGCCAGCAGCGAGGATCTGGAGCACG
CAGCCACATTGGACCATAGTTCGCTGGAGTCCATGATGCATCTGCGCCGC
AGAGCAAGCTTTCTAGACCAT
BO24490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12964-RB | 3390 | CG12964-PB | 1..3387 | 17..3403 | 16935 | 100 | Plus |
| CG12964-RC | 3390 | CG12964-PC | 1..3387 | 17..3403 | 16935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12964-RB | 3857 | CG12964-RB | 160..3546 | 17..3403 | 16935 | 100 | Plus |
| CG12964-RC | 3942 | CG12964-RC | 245..3631 | 17..3403 | 16935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15486529..15489350 | 3210..389 | 14110 | 100 | Minus |
| 2R | 25286936 | 2R | 15489547..15489899 | 389..37 | 1765 | 100 | Minus |
| 2R | 25286936 | 2R | 15486264..15486456 | 3403..3211 | 965 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2989 | 1244..1920 | 544 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2948 | 1259..1921 | 483 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2958 | 1087..1754 | 464 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2269..2944 | 1091..1766 | 447 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2900 | 1101..1642 | 407 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2696 | 1569..1933 | 298 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2473..2855 | 1569..1944 | 284 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2654 | 1564..1921 | 259 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6303..6926 | 1147..1760 | 257 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7172 | 1007..1432 | 257 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2430..2957 | 1549..2053 | 251 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6410..6900 | 1262..1752 | 203 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6433..6892 | 1182..1660 | 202 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6943 | 1569..1756 | 193 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2428..2940 | 1569..2054 | 188 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..7200 | 1569..1920 | 188 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2381 | 1341..1426 | 182 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2512 | 1503..1677 | 177 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6894 | 1569..1677 | 169 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1077..1140 | 1569..1632 | 167 | 73.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1158 | 1569..1632 | 158 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2380..2491 | 1569..1677 | 157 | 61.6 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 959..1011 | 1555..1607 | 148 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1594 | 1569..1638 | 145 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6864..6923 | 1566..1631 | 145 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1618 | 1569..1637 | 140 | 68.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7945..8031 | 1562..1649 | 140 | 65.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9389..9475 | 1562..1649 | 140 | 65.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1153 | 1572..1615 | 139 | 79.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 124..224 | 978..1076 | 139 | 65 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9154..9254 | 978..1076 | 139 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1120 | 1011..1059 | 130 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5648..5711 | 1570..1632 | 128 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6876..6918 | 1569..1611 | 125 | 76.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1099 | 1714..1756 | 125 | 76.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1010 | 1716..1756 | 124 | 78 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1132 | 1721..1756 | 117 | 80.6 | Plus |
BO24490.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-10 16:09:42 Download gff for
BO24490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RB | 221..3607 | 17..3405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:02 Download gff for
BO24490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RC | 245..3631 | 17..3405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:25 Download gff for
BO24490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RC | 245..3631 | 17..3405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:25 Download gff for
BO24490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15486262..15486456 | 3211..3405 | 98 | <- | Minus |
| 2R | 15486529..15489349 | 390..3210 | 100 | <- | Minus |
| 2R | 15489547..15489898 | 38..389 | 100 | <- | Minus |
| 2R | 15496967..15496987 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:02 Download gff for
BO24490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11373767..11373961 | 3211..3405 | 98 | <- | Minus |
| arm_2R | 11374034..11376854 | 390..3210 | 100 | <- | Minus |
| arm_2R | 11377052..11377403 | 38..389 | 100 | <- | Minus |
| arm_2R | 11384472..11384492 | 17..37 | 100 | | Minus |
BO24490.pep Sequence
Translation from 16 to 3421
> BO24490.pep
MRTLPFLLALALLAFGVASSSSSTTSTTTSVKPKTANPKAESDKPTKQPS
PSASPSPSSKATNTSTTRQSKALKPGENRGKRTLYDFGNAGYLYPEVASR
RAGYVDNAASYYPQTGYYNGQSAVAQYPGSFGPAYAQYPQYLEAPEPIIE
IIIKDANETLAEEPAQPIVTKKKKKKEKVHVFYVNYKKDQNNKLHLESPI
ASLNNDDNEEEEEEEEEVIQYPVTPLPPVKSTTLRTIIHPDSEKYHSNSG
IHVSFGAENKHQTGHILEEHDAESIQRQVVALPPSVSSKSEVSYVSNTRA
DYGRENNFGSRPGPISNMLFGSNYQQSGINYQQQQQQLPTQHSNNYFRPP
SALVGPPPNYPKPAPQQQVQQPHRPSITQQQLPSTSSQTIFNKLVQQSQF
YINHNQQYPQQQHQQQQHQQQHQQQQHQQQQHQQQHQYQQQHQHQHHQAP
QQHQQQAPQQQQYQKPPHKQVQVPFFPTIPPKSVTPAPYQPVKFRPTPAP
VAPAKPVPLPVKLDNANYQQQQQQHYQPQQQQKLPHQQQSYQFVRQPQFV
QQPQFVVRSPTPPPEYYSQQKQQTQQQHHQSALNYFDIKPSKETELLKSI
PKFEQHITETVQNPIATAQQPQQQYHQQQVQQQQQFGYSSTRNEVIHDVP
APNLGPTAQQHISGHYITAGSSGVQQSQQFGSFPSASPTQPPVYAESTHG
QKVMVVTPVPPSSNYVTYSQYSQTANEPVVHINAQSAALQAQASTNFAQQ
PRQPASSLISAPSTDNSPFSVSTYHSDVFKELEQRNQKDKKVSQQVQQQA
QQIAAAPASASVPAPTSTPATAPNGKASQTLLQLPDEVPDDLRQQLFSSG
ILNNADISILDYDKQGDIALENLPAEHLQHFYGAGGGAQIAETNKVLTVV
KPNGDKVALSEKQLDRVKQTNSLPQKQDLDVKVVRYDAAQGQSVSDKYVR
TDATVVTPVDLAERQQYNRYLPLKINGAQFPIPDSEELLGKRIVSVVVLA
PVEAQNPGQAAGEARSADGKEVKFLGGELIKTLVKKPTKENFKRWLEKEA
RTDLELQSVVLLVAKSTDPSAEQEIFMYEIGTGSINRLNGELSSTFVNVA
EENASSEDLEHAATLDHSSLESMMHLRRRASFLDH
BO24490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12964-PB | 1129 | CG12964-PB | 1..1129 | 1..1129 | 5868 | 100 | Plus |
| CG12964-PC | 1129 | CG12964-PC | 1..1129 | 1..1129 | 5868 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 586..1126 | 326..845 | 331 | 28.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 293..803 | 322..860 | 315 | 28.1 | Plus |
| Wnk-PN | 2441 | CG7177-PN | 799..1399 | 151..631 | 301 | 26.6 | Plus |
| Wnk-PL | 2441 | CG7177-PL | 799..1399 | 151..631 | 301 | 26.6 | Plus |
| ptip-PA | 2294 | CG32133-PA | 830..1445 | 136..845 | 290 | 22.8 | Plus |
| ptip-PA | 2294 | CG32133-PA | 187..683 | 358..849 | 288 | 28 | Plus |
| ptip-PA | 2294 | CG32133-PA | 795..1313 | 322..845 | 276 | 25.3 | Plus |
| Wnk-PN | 2441 | CG7177-PN | 1791..2310 | 14..569 | 186 | 24.1 | Plus |
