BO24496.complete Sequence
2470 bp assembled on 2010-06-28
GenBank Submission: KX798838
> BO24496.complete
GAAGTTATCAGTCGACATGGATCTAGCAGATCAAATCGATGACTATATCT
GTTCGTTCGAGGGACTTGGTGACTTAACAATGGACTCCCTGGCCATCTTC
ATTTTCCTGTGGGCCGTTCTGGCCCTCTTCTCCGTGTGGCTAATCAAGCT
GCTCTACCACAAGTATCTCAACAAGGACAAGTCGGCCAGTGCGGCCAACA
GTCGCCAGACGAGCGTGGCCCCCACATCCGGATCACCCACGTCCGTCGCC
GGCAAGACGGAGAAACGTCTCTCGGAGCCGCGCGATCTCCTGGCCACCAA
GAGCAAGGTTGAAGGCTTGGACTTATCCAAGCCTCTGGCCGGCGCATCCG
GTGGCCGAGGACGTTCATCAGCATCGCCATTGAATACCGCTGGTGCAGCT
GCCGGCGGTCCACGTCGTCGGGTGGTGCGTCAGAGTTCCACTGGGCCAGA
GAATCGCAAGAAGCGCTATGTCCCACCGCCATCGAATGTCGTGGGTCCAG
AAACGAGCTCCGTCACCTGGACCAGCCAAGTGTTTCGCTGGCTTTATAGC
GACCTGGTCATCGTCAACGAGCTGCTCATGTCCTGGGTAATCGCCATCAA
CGACACGCTGCGCAAGTCTGTGGAGGAGCATGGAGTGGCCGTTGAAGTGG
TTCGAGTGCTACCCGACAGTCCTGCCCCCGGATTGAATAATATATTTTGT
AATTGCGATGAAAACAATCCCGCTGATATGCTCATCACCTTTGACTGCGA
TGCAATGCCGGTGTTGCAGGTGAAGACCTTCCGCCAAAAGTCGGGCAAGG
TGGAGACCTCCCACTACAAGGTCACCGTGTCTAGGTTCCGCGCCCGTATG
GCCATTCCCATGAACTACAACAGCCTCAAGGGTGAGATGCGAGTCGAGGG
CTATCCGGATGTTCGCATCGCGATGAACAGCGTGGGTGCCATCAAGGCAA
TGGATCAGGATGAACAGCAATTGCAGACGGTGATCAGCGACATCCTGACG
ACGGCTTTGCGCGACACCATCTATCCGGTGGACTTCTCCATTTACTCCAC
CTGTCCAAGGGCCGAAGTGGAGCCCCTGGACCTGCCCGTAATCTATCCCG
TTCACTATGACTCGCTGGCGCACAACATGGAGCAGCACATGGGTGGCGTG
GGATTGAGGGATTCGCAACACATGGTTTCCGGCCGTCGGCTGCTGGTGAA
GATCGTCAAGGGCGATGGAATAAGGGATGCCCAGAATCCCTACGTGGTCA
TCGAGATGGACGAGCCGGCCCAGAAGAATCAGACGGGTACTCAGCGCGGC
GGCAAACCCTTCTGGGATGAGCACTTCCTCTTTGAACTCTCCCCTCAATC
AGCTGAGATCCTGTTCGAGGTGTATGACCATCCGGTGATTGCCTCAGATC
CGCCCAAGTTTCTGGGTCTCGGCCTGGTTGGAATCGATGAGCTGGCCGTT
GGACCCGCATCCACTCAACTGTTGCAGCTGCAACCACGCCCCTATGAGAC
GCAGCCCGTTTCGGGAGCCATCACCGTGGACTTTGTGTTCATTGAGGGTG
CCGAAATCCCGGCGGGCGCACGTCCACAGCGTCTCAAGGAGGCACTGCGT
CTCAGCACACCGGCCATTAACGAACACATCCGAAATGGAGCAGATCTAGC
GGATGCAGCCGTAAGAGCTCTGCAGGATGGAGCGCTCTCGAGCAGCGGAA
GTGGCGGACAACCCAGCAAGAGCACTTTGATCATCCACAGTGTGCAGCGG
AATTCAAGCAGCCCGAATGCATTTAAGTTTGGCCAGCCCAATGCCGCCTC
ATCGCCCAATGGCAGTAGTTACCACAACAACTATAGCCTCAATGGCAATG
GTAACTCGAATGGCGCCGGTTCGGGCGGATATAACAGTCTGCCACGAAAC
GGTGGTGCCCAGCAGCTGGCTCAGCAATCCGGATTATTGGAGGGCCATGA
CGTGGTCGATGATCGCGGGCGCAGCAAAAAACGACCACGCATGGGCATTG
GTCACTCCATCACCGACCACTCACGTCGCTCCTCAATTTCAGAATCCTCG
GCCATCTCAGGCTTTTCCTCGGCTAGCAATAAAACCTACGTGCACGAGGC
CTCCACCCTGGTGCTGGAGACCATCGAGAATGGCATAAAGCGCCACTTCA
TTGTGCCTTTGGCCATCGCCCAGAGACCGCGCTGGCGTCGCAAGGGCACC
AAGCTGCACATCTACAACGATCACACCTTCATCGCCAAGCATTTGAGCGG
AAGCGGTCTGCAGTGCTCCATCTGTATGAAGTCCATCCCGCGGAGGCCCG
GAAAGCAGGGCTACGAGTGTCGCGACTGCCAGCTGATTAGTCACAAGCAG
TGCCACATACGGGCACCACAAGCATGTCCCAATCCCACGGTGCTCTCCAT
GGAACTAACGTCATTTCCGGTACTCACAGAGAGAGATATAAACCTAGTTA
ACGCAAGCTTTCTAGACCAT
BO24496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-RU | 2439 | CG10737-PU | 1..2436 | 17..2452 | 12180 | 100 | Plus |
| CG10737-RT | 2868 | CG10737-PT | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| CG10737-RW | 2514 | CG10737-PW | 1..1734 | 17..1750 | 8670 | 100 | Plus |
| CG10737-RT | 2868 | CG10737-PT | 2396..2865 | 1983..2452 | 2350 | 100 | Plus |
| CG10737-RT | 2868 | CG10737-PT | 1967..2174 | 1776..1983 | 1040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-RU | 2771 | CG10737-RU | 240..2675 | 17..2452 | 12180 | 100 | Plus |
| CG10737-RT | 3049 | CG10737-RT | 89..1849 | 17..1777 | 8805 | 100 | Plus |
| CG10737-RP | 2981 | CG10737-RP | 32..1781 | 28..1777 | 8750 | 100 | Plus |
| CG10737-RT | 3049 | CG10737-RT | 2484..2953 | 1983..2452 | 2350 | 100 | Plus |
| CG10737-RT | 3049 | CG10737-RT | 2055..2262 | 1776..1983 | 1040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19170673..19171161 | 17..505 | 2445 | 100 | Plus |
| 2R | 25286936 | 2R | 19173704..19174121 | 1333..1750 | 2090 | 100 | Plus |
| 2R | 25286936 | 2R | 19173431..19173643 | 1120..1332 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 19172712..19172921 | 911..1120 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 19174880..19175087 | 1776..1983 | 1040 | 100 | Plus |
| 2R | 25286936 | 2R | 19172344..19172526 | 730..912 | 915 | 100 | Plus |
| 2R | 25286936 | 2R | 19176188..19176347 | 1983..2142 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 19176587..19176743 | 2250..2406 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 19171252..19171375 | 505..628 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 19176415..19176523 | 2142..2250 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 19172177..19172280 | 627..730 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 19176941..19176986 | 2407..2452 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:48:50 has no hits.
BO24496.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:10:05 Download gff for
BO24496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RU | 323..2758 | 17..2454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:06 Download gff for
BO24496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RU | 240..2675 | 17..2454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:25 Download gff for
BO24496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10737-RU | 240..2675 | 17..2454 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:25 Download gff for
BO24496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19176941..19176986 | 2407..2454 | 95 | | Plus |
| 2R | 19170673..19171161 | 17..505 | 100 | -> | Plus |
| 2R | 19171253..19171375 | 506..628 | 100 | -> | Plus |
| 2R | 19172179..19172280 | 629..730 | 100 | -> | Plus |
| 2R | 19172345..19172524 | 731..910 | 100 | -> | Plus |
| 2R | 19172712..19172921 | 911..1120 | 100 | -> | Plus |
| 2R | 19173432..19173643 | 1121..1332 | 100 | -> | Plus |
| 2R | 19173704..19174121 | 1333..1750 | 100 | -> | Plus |
| 2R | 19174339..19174365 | 1751..1777 | 100 | -> | Plus |
| 2R | 19174882..19175086 | 1778..1982 | 100 | -> | Plus |
| 2R | 19176188..19176347 | 1983..2142 | 100 | -> | Plus |
| 2R | 19176416..19176523 | 2143..2250 | 100 | -> | Plus |
| 2R | 19176588..19176743 | 2251..2406 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:06 Download gff for
BO24496.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15064446..15064491 | 2407..2454 | 95 | | Plus |
| arm_2R | 15060937..15061148 | 1121..1332 | 100 | -> | Plus |
| arm_2R | 15060217..15060426 | 911..1120 | 100 | -> | Plus |
| arm_2R | 15058178..15058666 | 17..505 | 100 | -> | Plus |
| arm_2R | 15058758..15058880 | 506..628 | 100 | -> | Plus |
| arm_2R | 15059684..15059785 | 629..730 | 100 | -> | Plus |
| arm_2R | 15059850..15060029 | 731..910 | 100 | -> | Plus |
| arm_2R | 15061209..15061626 | 1333..1750 | 100 | -> | Plus |
| arm_2R | 15061844..15061870 | 1751..1777 | 100 | -> | Plus |
| arm_2R | 15062387..15062591 | 1778..1982 | 100 | -> | Plus |
| arm_2R | 15063693..15063852 | 1983..2142 | 100 | -> | Plus |
| arm_2R | 15063921..15064028 | 2143..2250 | 100 | -> | Plus |
| arm_2R | 15064093..15064248 | 2251..2406 | 100 | -> | Plus |
BO24496.pep Sequence
Translation from 16 to 2470
> BO24496.pep
MDLADQIDDYICSFEGLGDLTMDSLAIFIFLWAVLALFSVWLIKLLYHKY
LNKDKSASAANSRQTSVAPTSGSPTSVAGKTEKRLSEPRDLLATKSKVEG
LDLSKPLAGASGGRGRSSASPLNTAGAAAGGPRRRVVRQSSTGPENRKKR
YVPPPSNVVGPETSSVTWTSQVFRWLYSDLVIVNELLMSWVIAINDTLRK
SVEEHGVAVEVVRVLPDSPAPGLNNIFCNCDENNPADMLITFDCDAMPVL
QVKTFRQKSGKVETSHYKVTVSRFRARMAIPMNYNSLKGEMRVEGYPDVR
IAMNSVGAIKAMDQDEQQLQTVISDILTTALRDTIYPVDFSIYSTCPRAE
VEPLDLPVIYPVHYDSLAHNMEQHMGGVGLRDSQHMVSGRRLLVKIVKGD
GIRDAQNPYVVIEMDEPAQKNQTGTQRGGKPFWDEHFLFELSPQSAEILF
EVYDHPVIASDPPKFLGLGLVGIDELAVGPASTQLLQLQPRPYETQPVSG
AITVDFVFIEGAEIPAGARPQRLKEALRLSTPAINEHIRNGADLADAAVR
ALQDGALSSSGSGGQPSKSTLIIHSVQRNSSSPNAFKFGQPNAASSPNGS
SYHNNYSLNGNGNSNGAGSGGYNSLPRNGGAQQLAQQSGLLEGHDVVDDR
GRSKKRPRMGIGHSITDHSRRSSISESSAISGFSSASNKTYVHEASTLVL
ETIENGIKRHFIVPLAIAQRPRWRRKGTKLHIYNDHTFIAKHLSGSGLQC
SICMKSIPRRPGKQGYECRDCQLISHKQCHIRAPQACPNPTVLSMELTSF
PVLTERDINLVNASFLDH
BO24496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10737-PU | 812 | CG10737-PU | 1..812 | 1..812 | 4205 | 100 | Plus |
| CG10737-PW | 837 | CG10737-PW | 1..823 | 1..798 | 3929 | 93.1 | Plus |
| CG10737-PA | 870 | CG10737-PA | 1..870 | 1..812 | 3830 | 87.5 | Plus |
| CG10737-PV | 852 | CG10737-PV | 1..838 | 1..798 | 3816 | 88.8 | Plus |
| CG10737-PS | 870 | CG10737-PS | 1..856 | 1..798 | 3760 | 87.3 | Plus |
