Clone BO24509 Report

Search the DGRC for BO24509

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:245
Well:9
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO24509.pep: Imported from assembly
Sequenced Size:517

Clone Sequence Records

BO24509.complete Sequence

517 bp assembled on 2010-07-02

> BO24509.complete
GAAGTTATCAGTCGACATGGGAGCATCGACAGTTAAGCCCTTTTCTGAAG
CGGAATGCAAGGCTATCAAGAAGTTCACGAAGAGTTACAAGAAGCATCAT
GCCGACCTAGACGAAGACGAGGTAAAAAGGTCAGCAGAAAATGCCTGGGG
AAAGCTTTTGCCCCATCAAAAGAAGTATTTTGAGGTGAGACCTAAAGAAA
CCCCCGTAAAAAGAATGTTGCCGGCCGCCAGGAAAAAACCTAAGAACCAG
AAGAAGAAAGCAGTCCCCAAATGGCGTTATCGTTCGAGGAAAAGACCCAT
GGCCAAGCCCACGCCAAATCCCAATAATCCTGCAATGAGCACCGCGTTCA
TTGGATTTTTGCGCGAGTACCAAAGGAGGAACACCATCGTAGACGTAAAG
AAAAGGCTGCAAAGAGCAGCCAAGATGTGGTCAAAACTATCTAAAGCTCA
GAAAAACAAATTTCGCACGGCGGGAGGGAGGGAGAGCTTTCTCAAGAATG
CAAGCTTTCTAGACCAT

BO24509.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG42355-RD 486 CG42355-PD 1..483 17..499 2415 100 Plus
CG42355-RC 486 CG42355-PC 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42355-RD 670 CG42355-RD 107..594 12..499 2425 99.8 Plus
CG42355-RC 742 CG42355-RC 179..666 12..499 2425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2037528..2037818 473..183 1455 100 Minus
3L 28110227 3L 2037872..2038046 186..12 860 99.4 Minus
Blast to na_te.dros performed on 2014-11-28 02:21:44 has no hits.

BO24509.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:58 Download gff for BO24509.complete
Subject Subject Range Query Range Percent Splice Strand
CG42355-RB 143..625 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:30 Download gff for BO24509.complete
Subject Subject Range Query Range Percent Splice Strand
CG42355-RC 184..666 17..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:35 Download gff for BO24509.complete
Subject Subject Range Query Range Percent Splice Strand
CG42355-RC 184..666 17..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:35 Download gff for BO24509.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2037874..2038041 17..184 100   Minus
3L 2037445..2037473 473..501 93 <- Minus
3L 2037529..2037816 185..472 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:30 Download gff for BO24509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2037445..2037473 473..501 93 <- Minus
arm_3L 2037529..2037816 185..472 100 <- Minus
arm_3L 2037874..2038041 17..184 100   Minus

BO24509.pep Sequence

Translation from 16 to 517

> BO24509.pep
MGASTVKPFSEAECKAIKKFTKSYKKHHADLDEDEVKRSAENAWGKLLPH
QKKYFEVRPKETPVKRMLPAARKKPKNQKKKAVPKWRYRSRKRPMAKPTP
NPNNPAMSTAFIGFLREYQRRNTIVDVKKRLQRAAKMWSKLSKAQKNKFR
TAGGRESFLKNASFLDH

BO24509.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG42355-PD 161 CG42355-PD 1..161 1..161 849 100 Plus
CG42355-PC 161 CG42355-PC 1..161 1..161 849 100 Plus