Clone BO24527 Report

Search the DGRC for BO24527

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:245
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG34161-RA
Protein status:BO24527.pep: Imported from assembly
Sequenced Size:409

Clone Sequence Records

BO24527.complete Sequence

409 bp assembled on 2010-05-18

GenBank Submission: KX795468

> BO24527.complete
GAAGTTATCAGTCGACATGAGCAGTCAAATTAAAAAGTCCAAAACGACCA
CCAAGAAATTGGTGAAATCATCTCCGAAAGCTCAACTTCCAAAAGCTGCG
GCACAGAATCAAATTTTTAGTTGCCAATTCGAGGTGTTTGGTCATGTGCA
AGGTGTCTTCTTTCGCAAGCACACTCAAAAAAAGGCCATTGAGCTGGGCA
TAACTGGCTGGTGCATGAACACAACTCAAGGAACGGTTCAGGGAATGCTC
GAAGGATCCTTGGACCAAATGACTGATATGAAATACTGGCTGCAGCACAA
GGGAAGTCCTCGTTCGGTGATCGAAAAGGCTGTATTCTCCGAGAATGAAC
CACTGCCCATCAACAACTTTAAGATGTTCTCGATTCGTCGCGCAAGCTTT
CTAGACCAT

BO24527.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-RC 378 CG34161-PC 1..375 17..391 1875 100 Plus
CG34161-RA 378 CG34161-PA 1..375 17..391 1875 100 Plus
CG34161-RB 363 CG34161-PB 1..360 17..391 1615 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-RC 563 CG34161-RC 66..440 17..391 1875 100 Plus
CG34161-RA 577 CG34161-RA 66..440 17..391 1875 100 Plus
CG34161-RB 553 CG34161-RB 66..425 17..391 1615 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10581500..10581637 154..17 690 100 Minus
2L 23513712 2L 10581260..10581372 280..168 565 100 Minus
2L 23513712 2L 10581094..10581205 391..280 560 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:46:40 has no hits.

BO24527.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:29:18 Download gff for BO24527.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RA 25..399 17..393 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:10 Download gff for BO24527.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RA 66..440 17..393 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:49 Download gff for BO24527.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RA 66..440 17..393 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:49 Download gff for BO24527.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10581092..10581205 280..393 98 <- Minus
2L 10581261..10581370 170..279 100 <- Minus
2L 10581424..10581440 153..169 100 <- Minus
2L 10581502..10581637 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:10 Download gff for BO24527.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10581092..10581205 280..393 98 <- Minus
arm_2L 10581261..10581370 170..279 100 <- Minus
arm_2L 10581424..10581440 153..169 100 <- Minus
arm_2L 10581502..10581637 17..152 100   Minus

BO24527.pep Sequence

Translation from 16 to 409

> BO24527.pep
MSSQIKKSKTTTKKLVKSSPKAQLPKAAAQNQIFSCQFEVFGHVQGVFFR
KHTQKKAIELGITGWCMNTTQGTVQGMLEGSLDQMTDMKYWLQHKGSPRS
VIEKAVFSENEPLPINNFKMFSIRRASFLDH

BO24527.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-PC 125 CG34161-PC 1..125 1..125 651 100 Plus
CG34161-PA 125 CG34161-PA 1..125 1..125 651 100 Plus
CG34161-PB 120 CG34161-PB 1..120 1..125 607 96 Plus
CG18371-PA 110 CG18371-PA 7..99 32..124 250 51.6 Plus
Acyp2-PB 102 CG18505-PB 9..101 32..124 245 47.3 Plus