Clone BO24539 Report

Search the DGRC for BO24539

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:245
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG34183-RA
Protein status:BO24539.pep: Imported from assembly
Sequenced Size:463

Clone Sequence Records

BO24539.complete Sequence

463 bp assembled on 2010-05-18

GenBank Submission: KX794147

> BO24539.complete
GAAGTTATCAGTCGACATGACTACAGAAAAAGGGGAGCAGTTGAGACAAC
AACTTATAGCGGCGGTGGTAAAGAAACGAGCGGCGATTGCGAGAGCCCAT
GAAATCGTGGTGCGGCTTTTGGAGCCCGGAATACCGGAGCCCGAGTTCCT
GTCCCTGCTCTGTGAGATTGGCCCCCCAAATTATTCAGACATAGTGGATG
AGCGGGAAATAAACAAACTTTGTGGATATCCACTTTGTTCGACAGTTCTA
GAAAACGTTCCCAAGCAAAAGTACAGTATCTCCGCTTCCAAAAACAAAGT
ATACGACATCACAGAACGCAAGAAATTCTGTTCCGGATACTGTTTTAAGG
CCTCCGAATATATTAAGTCACAGGTGCCCACATCGCCATTGTGGCTGCGA
GATAGGGAGACGAGACCTAGCTTTCAGCTGCTACCACGAAATACTGCAAG
CTTTCTAGACCAT

BO24539.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG34183-RA 432 CG34183-PA 1..429 17..445 2100 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG34183-RA 533 CG34183-RA 33..461 17..445 2100 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9890133..9890322 445..256 935 99.5 Minus
2L 23513712 2L 9890542..9890655 157..44 555 99.1 Minus
2L 23513712 2L 9890386..9890484 255..157 480 99 Minus
Blast to na_te.dros performed on 2014-11-28 02:47:03 has no hits.

BO24539.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:29:26 Download gff for BO24539.complete
Subject Subject Range Query Range Percent Splice Strand
CG34183-RA 48..476 17..447 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:18 Download gff for BO24539.complete
Subject Subject Range Query Range Percent Splice Strand
CG34183-RA 33..461 17..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:56 Download gff for BO24539.complete
Subject Subject Range Query Range Percent Splice Strand
CG34183-RA 33..461 17..447 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:56 Download gff for BO24539.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9890129..9890322 256..447 98 <- Minus
2L 9890386..9890483 158..255 98 <- Minus
2L 9890542..9890653 46..157 99 <- Minus
2L 9890712..9890740 17..45 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:18 Download gff for BO24539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9890129..9890322 256..447 98 <- Minus
arm_2L 9890386..9890483 158..255 98 <- Minus
arm_2L 9890542..9890653 46..157 99 <- Minus
arm_2L 9890712..9890740 17..45 100   Minus

BO24539.pep Sequence

Translation from 16 to 463

> BO24539.pep
MTTEKGEQLRQQLIAAVVKKRAAIARAHEIVVRLLEPGIPEPEFLSLLCE
IGPPNYSDIVDEREINKLCGYPLCSTVLENVPKQKYSISASKNKVYDITE
RKKFCSGYCFKASEYIKSQVPTSPLWLRDRETRPSFQLLPRNTASFLDH

BO24539.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG34183-PA 143 CG34183-PA 1..143 1..143 744 100 Plus