Clone BO24543 Report

Search the DGRC for BO24543

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:245
Well:43
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO24543.pep: Imported from assembly
Sequenced Size:469

Clone Sequence Records

BO24543.complete Sequence

469 bp assembled on 2010-05-18

> BO24543.complete
GAAGTTATCAGTCGACATGATGGCTGATTTGGTGAGCGGTGAAGCTTCTG
AATCCGACGAGGAGCTGCAGGAGAAGAATAAGATTTTTGCTGCTGAAATT
TCGGGCGAAGCCTCCGAAGAGGATGATGAAGACATTTACGAGCAAGGCCG
AAGCAGCAACCAGGTCAACAGCACGGCTTCCATTTACCGGAATAATCTGC
TTCAGCGGAAACTAATCGAAAACAACATTGCCATTTGGAGATCCCTTACC
GCTTTCACTCGCAGCTTTGTGTTGAGTGCATCAAAGCAGCTCGTAACCAC
TGATCAAATGCTCATCAAGTCGCAACATAGTCTTCAGTCGGCTCACACAT
CCCTGCAGCAGGCCCAGAAGAACGCCCAGGACCTGCAAAACAGGGTGGCT
GATGTTATTACCAGCAACTTCCTCCCGCACATAAGCATCCAGAAGGCAAC
CGCAAGCTTTCTAGACCAT

BO24543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Blos3-RA 435 CG34255-PA 1..432 20..451 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Blos3-RA 564 CG34255-RA 82..516 17..451 2175 100 Plus
Rad9-RA 1779 CG3945-RA 1337..1471 384..250 675 100 Minus
Rad9-RA 1779 CG3945-RA 1471..1519 65..17 245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18870614..18870849 216..451 1180 100 Plus
3L 28110227 3L 18870426..18870560 81..215 675 100 Plus
3L 28110227 3L 18870305..18870377 17..89 335 97.3 Plus
Blast to na_te.dros performed on 2014-11-28 02:47:14 has no hits.

BO24543.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-18 11:29:28 Download gff for BO24543.complete
Subject Subject Range Query Range Percent Splice Strand
CG34255-RA 52..486 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:21 Download gff for BO24543.complete
Subject Subject Range Query Range Percent Splice Strand
blos3-RA 82..516 17..453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:35:59 Download gff for BO24543.complete
Subject Subject Range Query Range Percent Splice Strand
Blos3-RA 82..516 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:35:59 Download gff for BO24543.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18870305..18870370 17..82 100 -> Plus
3L 18870428..18870560 83..215 100 -> Plus
3L 18870614..18870849 216..453 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:21 Download gff for BO24543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18863714..18863949 216..453 99   Plus
arm_3L 18863405..18863470 17..82 100 -> Plus
arm_3L 18863528..18863660 83..215 100 -> Plus

BO24543.pep Sequence

Translation from 16 to 469

> BO24543.pep
MMADLVSGEASESDEELQEKNKIFAAEISGEASEEDDEDIYEQGRSSNQV
NSTASIYRNNLLQRKLIENNIAIWRSLTAFTRSFVLSASKQLVTTDQMLI
KSQHSLQSAHTSLQQAQKNAQDLQNRVADVITSNFLPHISIQKATASFLD
H

BO24543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Blos3-PA 144 CG34255-PA 1..144 2..145 703 100 Plus