BO24546.complete Sequence
949 bp assembled on 2010-05-25
GenBank Submission: KX799271
> BO24546.complete
GAAGTTATCAGTCGACATGAGCTTCTCGGAAAACACCTCCGATTCTGAAT
GGAAGACAGACAAAATGCTAAAGGCGCGGACTGCTAAGAAATCTTTAAAG
CTGGACAAGGAGCACAGAACTCTGAAACCTAAATATAACCAGAAGTTCTG
CGAAAAGTGGCTCAAGATTTTCGATCCATGGCTCCGACGGGCGGCCGAGG
ATCCTAACAAGCCATTCTGCCGCGCTTGCCAGTGCACCATGGACTGCAAT
CGATGCCACCTGGTGCGGCACGAGCGAACCACCAAGCACAAGCGCAATCT
GGAGGCTCTGCTCACAAAGGGCGAAGGCGCGGCGGTCCAGGAGTTCCGGA
TTCGCCAGCAGCGTAGCAAGTACTATCACCAGCGTAAATTGGTAGTGATG
GAGCCCTTGGCTGAGAACCACGAGTTGGAGCCGCCTTCCACTCCAGAGCC
TATGCCCGTGATGGCCATTGCTGATCAAAGCCTCTGTTCTGCAGCCAGTG
AGAAGGTGACAGTACCCAAACAGGAGTTCTTATCAGAGACAGAGGTCACA
ACAAAGATGACCGAACCCCCGTCAAGCCATGCCAATTGCAGTGACAGCTC
CTCTTCTGCCTCTAAGCAGGAGGGCATAAAGTTACTAATGCAGATCCACC
AGGACAAAAACGAACTCATGGAATCCTTCCGCGAGCTGATGGGAAGCCAG
AGGACCCTAAGTCACACACCGCCGCCCAAGGAGAAGAATCATGTGGATCT
GTTTTTCGAAAGCGTCAGTTCCAGCGTGAAAGCCCTCTCGCCAAAGTTGG
TAGCGGAAGCCAAGATGCGAGTATCGCAGCTGATCTGTGAGCTCGAGCTT
CGCGGCCTCAGTGAAACCAGCCAAACGGACGCACTGAATCCAAACCCTCA
AGCTAATGAATCGCTCGCACTGCGCCCATCAGCAAGCTTTCTAGACCAT
BO24546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34149-RB | 918 | CG34149-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
CG34149-RA | 918 | CG34149-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34149-RB | 1032 | CG34149-RB | 40..954 | 17..931 | 4575 | 100 | Plus |
CG34149-RA | 1072 | CG34149-RA | 40..954 | 17..931 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22380255..22381135 | 51..931 | 4405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:36:54 has no hits.
BO24546.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-25 15:35:33 Download gff for
BO24546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34149-RB | 40..954 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:07 Download gff for
BO24546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34149-RA | 40..954 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:54 Download gff for
BO24546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34149-RA | 40..954 | 17..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:54 Download gff for
BO24546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22380167..22380201 | 17..51 | 100 | -> | Plus |
3R | 22380256..22381135 | 52..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:07 Download gff for
BO24546.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18205889..18205923 | 17..51 | 100 | -> | Plus |
arm_3R | 18205978..18206857 | 52..933 | 99 | | Plus |
BO24546.pep Sequence
Translation from 16 to 949
> BO24546.pep
MSFSENTSDSEWKTDKMLKARTAKKSLKLDKEHRTLKPKYNQKFCEKWLK
IFDPWLRRAAEDPNKPFCRACQCTMDCNRCHLVRHERTTKHKRNLEALLT
KGEGAAVQEFRIRQQRSKYYHQRKLVVMEPLAENHELEPPSTPEPMPVMA
IADQSLCSAASEKVTVPKQEFLSETEVTTKMTEPPSSHANCSDSSSSASK
QEGIKLLMQIHQDKNELMESFRELMGSQRTLSHTPPPKEKNHVDLFFESV
SSSVKALSPKLVAEAKMRVSQLICELELRGLSETSQTDALNPNPQANESL
ALRPSASFLDH
BO24546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34149-PB | 305 | CG34149-PB | 1..305 | 1..305 | 1590 | 100 | Plus |
CG34149-PA | 305 | CG34149-PA | 1..305 | 1..305 | 1590 | 100 | Plus |
CG43342-PA | 180 | CG31169-PA | 56..151 | 196..283 | 154 | 42.3 | Plus |