BO24554.complete Sequence
1372 bp assembled on 2010-06-24
GenBank Submission: KX796068
> BO24554.complete
GAAGTTATCAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAA
TTTCGCAATTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAA
GTTCTGCCGACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTT
CCATTGGATGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGC
GCCTGTTCGAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACC
GAGCTCATTATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTC
GCATCCTGCAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGG
ATCTCTGCCTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACC
ATTGTGGACGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAAC
AAATGGCACCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGAT
CCAAGCCAAAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGAC
AACGAGGATGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAA
GAGCGAGCGCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTT
CCAGCAGCCCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCAC
AGTCCATCACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGC
ACGCCGCTCCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCG
TAGTTGGCGAGACCAGGAGCGGCAAGAGCAGAGGACCCAAGCCCAAAGTG
AAACGAGTATCGCCAGTGCCGGCCAAAGATTTCAAGGTGGAACACATGGA
CGGAGGGCGGTTCAATGCATTGCAGCGGCTGGACAGCATGCTGGACACGC
CCAAGCCGCGCGAGGTTAAGATTTTACTCTTGGAAAAAATGGGCGAGGAC
GAGGTGCTGAATACGTTCGAAAACTATCGCAGCGACTTCGATAAGCTGTT
CAAGGAGCGCGAGTTCAAGCCGCGCACCAGTCACTACATGAACATTGCCC
ACATGGACGTCATCGACATACTGAGCAAGAGCATTCACCAGCAGATGCTC
AAGAAACTGGGCGAGGTCTACAGCAGTCGAAGCAACCACACGTCGCTGCT
GGTGAACGGACTGCTCCCGCTGTGGATAGTGCGCCTCTTTATGGACACAT
ACACGCTGTCCCAATCGGAGGCCGTGCAGCAGATCCGCGACCAGATGAAG
TACAACACCTACTTGAGGGCCCTGAACGATGAGCCGCTGAGTTCCGATCT
TGACGCAAGCTTTCTAGACCAT
BO24554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4951-RB | 1341 | CG4951-PB | 1..1338 | 17..1354 | 6690 | 100 | Plus |
| CG4951-RA | 963 | CG4951-PA | 1..959 | 17..975 | 4795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4951-RB | 1591 | CG4951-RB | 61..1398 | 17..1354 | 6690 | 100 | Plus |
| CG4951-RA | 1074 | CG4951-RA | 61..1019 | 17..975 | 4795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27953498..27953949 | 516..65 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 27952475..27952682 | 1183..976 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 27953143..27953342 | 715..516 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 27952244..27952414 | 1354..1184 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 27952757..27952925 | 975..807 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 27952993..27953085 | 807..715 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 27954002..27954052 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:46:02 has no hits.
BO24554.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:37 Download gff for
BO24554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RB | 61..1398 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:56 Download gff for
BO24554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RB | 61..1398 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:22 Download gff for
BO24554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RB | 61..1398 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:22 Download gff for
BO24554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27952993..27953085 | 715..807 | 100 | <- | Minus |
| 3R | 27953144..27953341 | 517..714 | 100 | <- | Minus |
| 3R | 27952241..27952414 | 1184..1356 | 98 | <- | Minus |
| 3R | 27952475..27952682 | 976..1183 | 100 | <- | Minus |
| 3R | 27952757..27952924 | 808..975 | 100 | <- | Minus |
| 3R | 27953498..27953946 | 68..516 | 100 | <- | Minus |
| 3R | 27954002..27954052 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:56 Download gff for
BO24554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23778479..23778646 | 808..975 | 100 | <- | Minus |
| arm_3R | 23778715..23778807 | 715..807 | 100 | <- | Minus |
| arm_3R | 23778866..23779063 | 517..714 | 100 | <- | Minus |
| arm_3R | 23777963..23778136 | 1184..1356 | 98 | <- | Minus |
| arm_3R | 23778197..23778404 | 976..1183 | 100 | <- | Minus |
| arm_3R | 23779220..23779668 | 68..516 | 100 | <- | Minus |
| arm_3R | 23779724..23779774 | 17..67 | 100 | | Minus |
BO24554.pep Sequence
Translation from 16 to 1372
> BO24554.pep
MSFSAIGDCQLISQLYQYKKHRVICSVKVLPTPVTHFERESKNDFHWMTA
DRWSRIECGLWRLFENLKQWQDAYQLDTELIIDHIIVRVQATNKSHPATV
ALLAGTESSSKDLCLDLQLQYITQEDTTIVDVIPAKRELATEAETNGTRP
TSRKIRVANSGSKPKAGTQSKPKHIDADNEDDKSSTTASQPTKIKSERRS
ISQGGEKDKASSSSPSSSQQSNRIKRSHSPSQQNSRSSSVEAKPARRSGR
SPIRPSRFKNFVVGETRSGKSRGPKPKVKRVSPVPAKDFKVEHMDGGRFN
ALQRLDSMLDTPKPREVKILLLEKMGEDEVLNTFENYRSDFDKLFKEREF
KPRTSHYMNIAHMDVIDILSKSIHQQMLKKLGEVYSSRSNHTSLLVNGLL
PLWIVRLFMDTYTLSQSEAVQQIRDQMKYNTYLRALNDEPLSSDLDASFL
DH
BO24554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4951-PB | 446 | CG4951-PB | 1..446 | 1..446 | 2291 | 100 | Plus |
| CG4951-PA | 320 | CG4951-PA | 1..320 | 1..320 | 1645 | 100 | Plus |
