BO24629.complete Sequence
568 bp assembled on 2010-05-21
GenBank Submission: KX796295
> BO24629.complete
GAAGTTATCAGTCGACATGGATCTCGTCGAGGTGTATTACTTTATATCCT
TCATTCTGATATTCCTTATTTTGATAAGGGCCTATATCTGTCCCAATCAC
AAGTGGAAGTGCGTCTGCTGCCTGCAATATCGGCACGAATCTGATCGTAA
TGTATTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTT
TCTTCATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTG
GAAAAGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTG
TAACCTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAAT
CGCCCCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCA
CCGTATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGT
CATCGCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTC
CACCCAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTG
GCAAGCTTTCTAGACCAT
BO24629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12963-RC | 537 | CG12963-PC | 1..534 | 17..550 | 2670 | 100 | Plus |
| CG12963-RJ | 540 | CG12963-PJ | 128..537 | 141..550 | 2050 | 100 | Plus |
| CG12963-RH | 594 | CG12963-PH | 182..591 | 141..550 | 2050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12963-RC | 785 | CG12963-RC | 37..570 | 17..550 | 2670 | 100 | Plus |
| CG12963-RJ | 782 | CG12963-RJ | 158..567 | 141..550 | 2050 | 100 | Plus |
| CG12963-RH | 867 | CG12963-RH | 243..652 | 141..550 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15561814..15562221 | 143..550 | 2040 | 100 | Plus |
| 2R | 25286936 | 2R | 15556414..15556478 | 79..143 | 325 | 100 | Plus |
| 2R | 25286936 | 2R | 15556295..15556358 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 257..216 | 111 | 73.8 | Minus |
BO24629.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-21 14:40:42 Download gff for
BO24629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RC | 36..569 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:12 Download gff for
BO24629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RC | 37..570 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:47 Download gff for
BO24629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RC | 37..570 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:47 Download gff for
BO24629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15556295..15556357 | 17..79 | 100 | -> | Plus |
| 2R | 15556415..15556478 | 80..143 | 100 | -> | Plus |
| 2R | 15561815..15562221 | 144..552 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:12 Download gff for
BO24629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11443800..11443862 | 17..79 | 100 | -> | Plus |
| arm_2R | 11443920..11443983 | 80..143 | 100 | -> | Plus |
| arm_2R | 11449320..11449726 | 144..552 | 99 | | Plus |
BO24629.pep Sequence
Translation from 16 to 568
> BO24629.pep
MDLVEVYYFISFILIFLILIRAYICPNHKWKCVCCLQYRHESDRNVFNAQ
EDPSSNRYGDIFFIEPGSVEANRIRDQLEKDEKDLPSYDEVMRMCNLTTP
TAAAAGMPVPQSPLGVPSPIGIAALPAPPYSETDPHSSSAAEATVIAMEP
MEPSTSRAAQIPPSSGSGPPAPLPTTAVASFLDH
BO24629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12963-PC | 178 | CG12963-PC | 1..178 | 1..178 | 942 | 100 | Plus |
| CG12963-PM | 176 | CG12963-PM | 1..176 | 1..178 | 723 | 80.3 | Plus |
| CG12963-PA | 190 | CG12963-PA | 7..190 | 9..178 | 719 | 80.4 | Plus |
| CG12963-PI | 179 | CG12963-PI | 6..179 | 11..178 | 718 | 84.7 | Plus |
| CG12963-PL | 169 | CG12963-PL | 3..169 | 13..178 | 712 | 85 | Plus |
