BO24749.complete Sequence
487 bp assembled on 2010-05-17
GenBank Submission: KX795635
> BO24749.complete
GAAGTTATCAGTCGACATGGCCTTCAAGTTCTTCGCTGTTCTCGCCCTCA
TCTCGGCCGCCAGTGCCGGAGTTCTTCCCGTCCAGCAGGTGTATCACGCC
GCCCCCGCCGTGGCCACCTACGCCCAAGCACCTGTCGCCGTTGCCCACGC
CCAGCCGGTTCTGACCAAGGCCACCGAGGAATACGATCCCCATCCCCAGT
ACAAGTTCGCCTACGATGTCCAGGACTCCCTTTCCGGAGACTCGAAGAGT
CAGGTTGAGGAGCGTGATGGCGACGTGGTCCATGGCGAGTACTCCCTGAT
CGATTCCGATGGCTACAAGCGCATTGTCCAGTACACCTCCGACCCGGTCA
ACGGTTTCAACGCCGTCGTCAACCGCGTTCCCCTGGATCACGTGAAGACC
GTGGTGAAGACCGTGGCTCCTGTGGCCGTGGCTGCTGCCCCTATCCCAGT
GGCCTACCACCAGCACCACGCAAGCTTTCTAGACCAT
BO24749.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Af-RA | 456 | CG1331-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
| Ccp84Ad-RA | 600 | CG2341-PA | 1..370 | 17..386 | 1205 | 88.4 | Plus |
| Cpr5C-RA | 438 | CG4052-PA | 138..410 | 148..426 | 595 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Af-RA | 580 | CG1331-RA | 53..506 | 16..469 | 2270 | 100 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 67..436 | 17..386 | 1205 | 88.4 | Plus |
| Cpr5C-RA | 605 | CG4052-RA | 192..464 | 148..426 | 595 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6689676..6690118 | 469..27 | 2215 | 100 | Minus |
| 3R | 32079331 | 3R | 6692884..6693228 | 42..386 | 1170 | 89.3 | Plus |
| X | 23542271 | X | 5804931..5805203 | 148..426 | 595 | 81.7 | Plus |
| 3R | 32079331 | 3R | 6704277..6704571 | 86..386 | 465 | 77.7 | Plus |
| 3R | 32079331 | 3R | 6702374..6702668 | 386..86 | 420 | 76.7 | Minus |
| 3R | 32079331 | 3R | 6687088..6687275 | 176..363 | 340 | 78.7 | Plus |
| 3R | 32079331 | 3R | 6691265..6691450 | 370..185 | 315 | 78 | Minus |
| 3R | 32079331 | 3R | 6695740..6695935 | 386..191 | 275 | 76 | Minus |
| 3L | 28110227 | 3L | 4215945..4216123 | 185..363 | 250 | 76 | Plus |
| 2L | 23513712 | 2L | 11945176..11945341 | 171..336 | 215 | 75.3 | Plus |
| 3L | 28110227 | 3L | 4211080..4211255 | 360..185 | 205 | 74.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:36:47 has no hits.
BO24749.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-17 10:58:24 Download gff for
BO24749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 1..453 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:27 Download gff for
BO24749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 54..506 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:39 Download gff for
BO24749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 54..506 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:39 Download gff for
BO24749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6689673..6690122 | 21..471 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:27 Download gff for
BO24749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2515395..2515844 | 21..471 | 98 | | Minus |
BO24749.pep Sequence
Translation from 16 to 487
> BO24749.pep
MAFKFFAVLALISAASAGVLPVQQVYHAAPAVATYAQAPVAVAHAQPVLT
KATEEYDPHPQYKFAYDVQDSLSGDSKSQVEERDGDVVHGEYSLIDSDGY
KRIVQYTSDPVNGFNAVVNRVPLDHVKTVVKTVAPVAVAAAPIPVAYHQH
HASFLDH
BO24749.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Af-PA | 151 | CG1331-PA | 1..151 | 1..151 | 775 | 100 | Plus |
| Ccp84Ad-PA | 199 | CG2341-PA | 1..151 | 1..147 | 598 | 82.1 | Plus |
| Cpr5C-PA | 145 | CG4052-PA | 1..144 | 1..148 | 542 | 74.7 | Plus |
| Ccp84Aa-PA | 205 | CG2360-PA | 1..151 | 1..147 | 491 | 69.3 | Plus |
| Ccp84Ab-PA | 221 | CG1252-PA | 1..151 | 1..147 | 486 | 68.6 | Plus |
