BO24752.complete Sequence
223 bp assembled on 2010-05-17
GenBank Submission: KX797894
> BO24752.complete
GAAGTTATCAGTCGACATGAACTTCTACAACATCTTCGTTTTCGTCGCTC
TCATTCTGGCCATCACCATTGGACAATCGGAAGCTGGTTGGCTAAAGAAA
ATTGGCAAGAAAATCGAACGTGTTGGTCAGCACACTCGCGACGCCACAAT
CCAGGGACTGGGAATCGCTCAACAGGCCGCCAATGTTGCAGCCACTGCTC
GAGGTGCAAGCTTTCTAGACCAT
BO24752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CecA2-RA | 192 | CG1367-PA | 1..189 | 17..205 | 945 | 100 | Plus |
| CecA1-RA | 192 | CG1365-PA | 1..189 | 17..205 | 795 | 94.7 | Plus |
| CecC-RA | 192 | CG1373-PA | 1..179 | 17..195 | 565 | 87.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CecA2-RA | 355 | CG1367-RA | 82..271 | 16..205 | 950 | 100 | Plus |
| CecA1-RA | 339 | CG1365-RA | 74..263 | 16..205 | 800 | 94.7 | Plus |
| CecC-RA | 386 | CG1373-RA | 93..272 | 16..195 | 570 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30212237..30212337 | 16..116 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 30210947..30211047 | 16..116 | 475 | 98 | Plus |
| 3R | 32079331 | 3R | 30212395..30212484 | 116..205 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 30216576..30216676 | 16..116 | 385 | 92.1 | Plus |
| 3R | 32079331 | 3R | 30211108..30211197 | 116..205 | 330 | 91.1 | Plus |
| 3R | 32079331 | 3R | 30213479..30213568 | 205..116 | 255 | 85.6 | Minus |
| 3R | 32079331 | 3R | 30216752..30216824 | 123..195 | 200 | 84.9 | Plus |
| 3R | 32079331 | 3R | 30213626..30213730 | 116..12 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:07 has no hits.
BO24752.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-09 16:56:52 Download gff for
BO24752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CecA2-RA | 83..271 | 17..207 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:58 Download gff for
BO24752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CecA2-RA | 83..271 | 17..207 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:07 Download gff for
BO24752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CecA2-RA | 83..271 | 17..207 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:07 Download gff for
BO24752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30212238..30212336 | 17..115 | 100 | -> | Plus |
| 3R | 30212395..30212484 | 116..207 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:58 Download gff for
BO24752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26037960..26038058 | 17..115 | 100 | -> | Plus |
| arm_3R | 26038117..26038206 | 116..207 | 97 | | Plus |
BO24752.pep Sequence
Translation from 16 to 223
> BO24752.pep
MNFYNIFVFVALILAITIGQSEAGWLKKIGKKIERVGQHTRDATIQGLGI
AQQAANVAATARGASFLDH
BO24752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CecA2-PA | 63 | CG1367-PA | 1..63 | 1..63 | 313 | 100 | Plus |
| CecA1-PA | 63 | CG1365-PA | 1..63 | 1..63 | 313 | 100 | Plus |
| CecC-PA | 63 | CG1373-PA | 1..63 | 1..63 | 297 | 92.1 | Plus |
| CecB-PA | 63 | CG1878-PA | 1..63 | 1..63 | 268 | 84.1 | Plus |
