BO24757.complete Sequence
1060 bp assembled on 2010-05-17
GenBank Submission: KX800011
> BO24757.complete
GAAGTTATCAGTCGACATGTCGCCTAACCGTGTTTGCTTGCCACTTGGCC
TGCCGCTGTTGCTTTTCCTGCTCGGTTGCCTTGTGTCCTCGACTCATGGC
ACCTGCAACGTCTGCAACACCGTCAACAATCTGACCTGCTACTCCTCGAC
CCAGATGCAGTCCTGCCAGGTGGACGTCCTGTCCACGGCCACGCCCACCG
ATTGCCCCAGCGGCTATGTCTGCGTCAGCGGCTCCAGCGGTGTGCTCTGC
CAGCCGGAGGACTCGGCATCTGACAGTCAGGCGGACTGCCAGGAGTGCAA
CAAGTGCGATGAGACCCAGACGTTCGCCTGCACCGGAACCCAGAGCTTCG
CCCTCTGCCTGGGCACAGATACCGTCCAGGATTCGGTGGGCACCTGTGCC
TCCGGTTATGTGTGCAACATCAACGACACCCAGATATGCGGTCTGCCAGC
GGATGGGGTGATGCCGACCTGTTCGTATAGCGATGACTCAACCACAACCA
CGGTGAGCAGCACCACCAGCTCCACCACAGCGGCACCACCTTCCACCAGC
TCGGCATCCACTTACTGTGCGGCGGTTCAGTCGCAGGGAAAATACGCGGT
CGGATATAACGCGTATACGACCTGTCGCCAGTATATCTACTGCACTTTGG
TTGACGGAAGTTGGATTGGCCAGACCTACACTTGTCCGGGATCCATGTAC
TTCGATAGTGCCTCCGAGATGTGTGTGTCCACCATGCCATCCACCTGTTC
CACAACTGCAACAACGAGTTCCACGACGACTGCGGCACCCACGACCAGTA
ATCCGGAGGCATATTGCCAGGCGATGCAGTCGGCGGGCTACTACCCGGTG
GGTACGGATGCCAGCACCACGTGTCATCAGTACATCGACTGTTTTCTGAA
CGGAGGCACTTGGGGTGGCAATATGTACACATGTCCCGGTAGCCTCTACT
ACAACAGTGCCAGCAGAACATGTGTCTCCACCTTACCATCCACATGCTCC
ACCACAGTGGCCAGTTTAACCCTCAATGGAGTGGTTTTAGATGCAAGCTT
TCTAGACCAT
BO24757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13312-RA | 1029 | CG13312-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13312-RA | 1061 | CG13312-RA | 12..1041 | 13..1042 | 5135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8805831..8806416 | 1042..457 | 2930 | 100 | Minus |
| 3L | 28110227 | 3L | 8806756..8807202 | 459..13 | 2220 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:37:56 has no hits.
BO24757.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-17 10:58:38 Download gff for
BO24757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 1..1026 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:53 Download gff for
BO24757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 16..1041 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:33:04 Download gff for
BO24757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 16..1041 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:33:04 Download gff for
BO24757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8805829..8806415 | 458..1044 | 99 | <- | Minus |
| 3L | 8806758..8807198 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:53 Download gff for
BO24757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8798929..8799515 | 458..1044 | 99 | <- | Minus |
| arm_3L | 8799858..8800298 | 17..457 | 100 | | Minus |
BO24757.pep Sequence
Translation from 16 to 1060
> BO24757.pep
MSPNRVCLPLGLPLLLFLLGCLVSSTHGTCNVCNTVNNLTCYSSTQMQSC
QVDVLSTATPTDCPSGYVCVSGSSGVLCQPEDSASDSQADCQECNKCDET
QTFACTGTQSFALCLGTDTVQDSVGTCASGYVCNINDTQICGLPADGVMP
TCSYSDDSTTTTVSSTTSSTTAAPPSTSSASTYCAAVQSQGKYAVGYNAY
TTCRQYIYCTLVDGSWIGQTYTCPGSMYFDSASEMCVSTMPSTCSTTATT
SSTTTAAPTTSNPEAYCQAMQSAGYYPVGTDASTTCHQYIDCFLNGGTWG
GNMYTCPGSLYYNSASRTCVSTLPSTCSTTVASLTLNGVVLDASFLDH
BO24757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13312-PA | 342 | CG13312-PA | 1..342 | 1..342 | 1859 | 100 | Plus |
| CG13308-PB | 233 | CG13308-PB | 6..231 | 6..255 | 460 | 39.2 | Plus |
| CG13309-PA | 229 | CG13309-PA | 4..219 | 15..249 | 427 | 38 | Plus |
| CG32024-PA | 209 | CG32024-PA | 9..209 | 16..245 | 289 | 28.4 | Plus |
| CG13309-PA | 229 | CG13309-PA | 19..228 | 94..341 | 285 | 30.3 | Plus |
| CG13308-PB | 233 | CG13308-PB | 24..230 | 93..336 | 275 | 29.5 | Plus |
| CG34426-PA | 296 | CG34426-PA | 1..293 | 14..330 | 272 | 28.1 | Plus |
| CG32024-PA | 209 | CG32024-PA | 22..209 | 93..328 | 153 | 23.7 | Plus |
