Clone BO24770 Report

Search the DGRC for BO24770

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:247
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG30413-RA
Protein status:BO24770.pep: Imported from assembly
Sequenced Size:400

Clone Sequence Records

BO24770.complete Sequence

400 bp assembled on 2010-05-17

GenBank Submission: KX796360

> BO24770.complete
GAAGTTATCAGTCGACATGTACCTCTTTGGCGTTTTCCTGCTCTTGGTCG
GCACTCACGTCTGCTTCATCGATGCGAACTTCGGCAGCGGAGAAGGAAAT
GACTACACCTACGGCACCCAGGCAACAACGGATACCCTCATCGCCAGTGA
GACCATAACCAAGTCGAAATCCTTGCTGGGAATCACCACGAAGACGTATA
CTCTAACCCAGGCAGGAACTGCAAAGACCATCACCTACATCAAGATCACG
GATCTTAAGAAAATGCGTGGAGCCACTGCCGAAATTACCTCCGGTGGAGT
GGGATCCACGACAGTCACGATCAAATTCACCTCTGCACGGGGAGCTGGTA
TCAAGTCCCAAGTGGTGATATACGGATCAACCGCAAGCTTTCTAGACCAT

BO24770.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG30413-RA 369 CG30413-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30413-RA 526 CG30413-RA 44..409 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23329660..23330025 382..17 1830 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:31:54 has no hits.

BO24770.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-17 10:57:58 Download gff for BO24770.complete
Subject Subject Range Query Range Percent Splice Strand
CG30413-RA 1..366 17..384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:36 Download gff for BO24770.complete
Subject Subject Range Query Range Percent Splice Strand
CG30413-RA 44..409 17..384 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:08 Download gff for BO24770.complete
Subject Subject Range Query Range Percent Splice Strand
CG30413-RA 44..409 17..384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:08 Download gff for BO24770.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23329658..23330025 17..384 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:36 Download gff for BO24770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19217181..19217548 17..384 99   Minus

BO24770.pep Sequence

Translation from 16 to 400

> BO24770.pep
MYLFGVFLLLVGTHVCFIDANFGSGEGNDYTYGTQATTDTLIASETITKS
KSLLGITTKTYTLTQAGTAKTITYIKITDLKKMRGATAEITSGGVGSTTV
TIKFTSARGAGIKSQVVIYGSTASFLDH

BO24770.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG30413-PA 122 CG30413-PA 1..122 1..122 610 100 Plus
CG34026-PB 117 CG34026-PB 22..116 28..120 192 48.4 Plus
CG34026-PA 117 CG34026-PA 22..116 28..120 192 48.4 Plus