Clone BO24772 Report

Search the DGRC for BO24772

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:247
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG11293-RB
Protein status:BO24772.pep: Imported from assembly
Sequenced Size:718

Clone Sequence Records

BO24772.complete Sequence

718 bp assembled on 2010-05-17

GenBank Submission: KX796501

> BO24772.complete
GAAGTTATCAGTCGACATGATAGTGTTTCCGATTGTTTGTTCCAGAAGCA
ACACACATATGGACTGGCCCTGTAGTGGATTGTGTACCCAACACAGCCAA
ACAAACAGTGAGGCAATCACCCTTCGAAATGGGCCAAAAGCACACCAACA
CCAGTGCAGCAGTGCATGCACTCGATGGCTGTGTGTGCGTGTGAAAGTAG
TGAAAGCTGAAAGCCGAGGGCGAACGGGGCCAATACTTATGCTTATGCAA
GGCAGCCGAGATGCCGAGATGCCGACGCCACCGCCCCAAAGGGAGGCCAA
AAACGGAAAACAGGCGACATTCATCGCAGGACGTGAAGTGTTCACTGTAC
TTTGGGAGCGGAGGATAAGTCAAGACGTCAACAGAGGAAGCTGTACGATG
TTCGCCCCCCACTCGCTGCCCGTGACGTCACGACTGTTGCTTCTGGTGGT
GACACTGCTCTTCTGCCCCGTGCAGGCGCATCTCTCGAAGCGAAGCTACT
CGGATCAGAGTGTCCACGGCTACATGACCGAGCGCACCTGCTGGTGGAAC
GAGGTGTGTAAGGAGGAGTTCCAGAGCCTCTTCCGCTGCAAGTGCCCCCA
GTTCTCCTACTGCCGCTCGCCGGGACGCTACTACAATGCCTACTGCTCGA
TGACGGATACCGGTTATATTTGGACCCAGCCGAACTGGGATTGGGGGGCG
GCAAGCTTTCTAGACCAT

BO24772.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
St3-RC 1581 CG44167-PC 939..1578 61..700 3200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
St3-RC 2062 CG44167-RC 959..1598 61..700 3200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23686538..23686877 61..400 1700 100 Plus
2R 25286936 2R 23687032..23687164 400..532 665 100 Plus
2R 25286936 2R 23687431..23687516 615..700 430 100 Plus
2R 25286936 2R 23687232..23687316 531..615 425 100 Plus
2R 25286936 2R 23685850..23685894 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:32:11 has no hits.

BO24772.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-17 10:58:00 Download gff for BO24772.complete
Subject Subject Range Query Range Percent Splice Strand
CG11293-RA 1..456 245..702 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:43 Download gff for BO24772.complete
Subject Subject Range Query Range Percent Splice Strand
St3-RD 172..855 17..702 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:12 Download gff for BO24772.complete
Subject Subject Range Query Range Percent Splice Strand
St3-RC 959..1598 61..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:12 Download gff for BO24772.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23685850..23685893 17..60 100 -> Plus
2R 23686538..23686877 61..400 100 -> Plus
2R 23687033..23687164 401..532 100 -> Plus
2R 23687234..23687316 533..615 100 -> Plus
2R 23687432..23687516 616..702 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:43 Download gff for BO24772.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19573373..19573416 17..60 100 -> Plus
arm_2R 19574061..19574400 61..400 100 -> Plus
arm_2R 19574556..19574687 401..532 100 -> Plus
arm_2R 19574757..19574839 533..615 100 -> Plus
arm_2R 19574955..19575039 616..702 97   Plus

BO24772.pep Sequence

Translation from 16 to 718

> BO24772.pep
MIVFPIVCSRSNTHMDWPCSGLCTQHSQTNSEAITLRNGPKAHQHQCSSA
CTRWLCVRVKVVKAESRGRTGPILMLMQGSRDAEMPTPPPQREAKNGKQA
TFIAGREVFTVLWERRISQDVNRGSCTMFAPHSLPVTSRLLLLVVTLLFC
PVQAHLSKRSYSDQSVHGYMTERTCWWNEVCKEEFQSLFRCKCPQFSYCR
SPGRYYNAYCSMTDTGYIWTQPNWDWGAASFLDH

BO24772.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
St3-PC 526 CG44167-PC 314..526 16..228 1191 100 Plus