BO24828.complete Sequence
400 bp assembled on 2010-05-17
GenBank Submission: KX795219
> BO24828.complete
GAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTGGCTATCG
TTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCTTGCTTAC
ACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTCCTGCTGC
CGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGCCAGGTTA
TCGCCAGGAACTACAATGGAATCGCCGTTGCTCCTGTGATTGCTCCCGTT
GCCGCTCCTGTGGTGGCCAAGTACACTGCTGCTCCTTTTGCCTACGCTTC
TCCTTTGGCCTACTCCGCTCCTCTGGCTTACACTTCTCCATTGGCTTATA
AAACTCTTCCGGCTGCTGCTCCAGTTCTTCTGGCAAGCTTTCTAGACCAT
BO24828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14096-RA | 369 | CG14096-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
CG18294-RA | 426 | CG18294-PA | 1..276 | 17..292 | 1320 | 98.6 | Plus |
CG12519-RB | 396 | CG12519-PB | 1..269 | 17..285 | 1315 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14096-RA | 458 | CG14096-RA | 51..416 | 17..382 | 1830 | 100 | Plus |
CG18294-RA | 507 | CG18294-RA | 55..330 | 17..292 | 1320 | 98.6 | Plus |
CG12519-RB | 600 | CG12519-RB | 53..321 | 17..285 | 1315 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19466609..19466962 | 382..29 | 1770 | 100 | Minus |
3L | 28110227 | 3L | 19475194..19475457 | 292..29 | 1260 | 98.5 | Minus |
3L | 28110227 | 3L | 19472610..19472866 | 29..285 | 1255 | 99.2 | Plus |
3L | 28110227 | 3L | 19478373..19478568 | 49..244 | 725 | 91.3 | Plus |
3L | 28110227 | 3L | 19423849..19424044 | 49..244 | 710 | 90.8 | Plus |
3L | 28110227 | 3L | 19467481..19467687 | 39..263 | 685 | 88 | Plus |
3L | 28110227 | 3L | 19471890..19472096 | 263..39 | 685 | 88 | Minus |
3L | 28110227 | 3L | 19475971..19476177 | 39..263 | 685 | 88 | Plus |
3L | 28110227 | 3L | 19488045..19488308 | 49..321 | 670 | 83.9 | Plus |
3L | 28110227 | 3L | 19423125..19423224 | 246..147 | 335 | 89 | Minus |
3L | 28110227 | 3L | 19424757..19424836 | 159..238 | 295 | 91.2 | Plus |
3L | 28110227 | 3L | 19424852..19424908 | 296..352 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 19464433..19464518 | 243..158 | 205 | 82.6 | Minus |
3L | 28110227 | 3L | 19424828..19424887 | 254..313 | 180 | 86.7 | Plus |
Blast to na_te.dros performed 2014-11-28 02:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 177..102 | 147 | 69.7 | Minus |
BO24828.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-17 10:58:19 Download gff for
BO24828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14096-RA | 56..416 | 22..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:23:03 Download gff for
BO24828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14096-RA | 56..416 | 22..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:32:21 Download gff for
BO24828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14096-RA | 56..416 | 22..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:32:21 Download gff for
BO24828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19466607..19466962 | 29..384 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:23:03 Download gff for
BO24828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19459707..19460062 | 29..384 | 99 | | Minus |
BO24828.pep Sequence
Translation from 16 to 400
> BO24828.pep
MFKSAVVILAIVACAAAKPGLLGAPLAYTAPLAYSAPLAYSAPAAVVAAP
APVVTATSSQVIARNYNGIAVAPVIAPVAAPVVAKYTAAPFAYASPLAYS
APLAYTSPLAYKTLPAAAPVLLASFLDH
BO24828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14096-PA | 122 | CG14096-PA | 1..122 | 1..122 | 595 | 100 | Plus |
CG12519-PB | 131 | CG12519-PB | 1..131 | 1..122 | 486 | 78.9 | Plus |
CG12519-PA | 131 | CG12519-PA | 1..131 | 1..122 | 486 | 78.9 | Plus |
CG18294-PA | 141 | CG18294-PA | 1..141 | 1..122 | 486 | 76.8 | Plus |
CG32214-PC | 116 | CG32214-PC | 1..116 | 1..122 | 418 | 74.6 | Plus |