Clone BO24860 Report

Search the DGRC for BO24860

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:248
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG34051-RA
Protein status:BO24860.pep: Imported from assembly
Sequenced Size:703

Clone Sequence Records

BO24860.complete Sequence

703 bp assembled on 2010-05-17

GenBank Submission: KX793970

> BO24860.complete
GAAGTTATCAGTCGACATGGGACCAAGGCTCTATCCCGCTGCGATCCTCA
TCCTCCATTGCCTGCTGTTGCTCTTCCTCCAGGTGGACAGCAGAGGTAAC
CAGAACCACACCCAGATGGAAAGACAGCGTCATCTCCGAGCACACAATCT
GCACAGGCCTCCATACGATGGATACGATTGGCACAAACACTTTAACCGAG
ATGCCGAACCAAAGGCGACAGTTGCAAAGGAGAAAGAAGAGAAGACTTTC
AAACACAGATCAGGACATTTAAAAAAGATGAAGCAGACAGCTAGGGATAT
TTCGAACTGGAGCAGAGCTCGGAGCGCCTACCAAAAAGAGACGGCAGAGC
TGGAGGAATGGGGTCGAAAGAAGAATATAACTGACAACGAACTGAAGTTA
TTCTTTGACGGTGAAATTTCTACCAAAGACAAGTACAGATTATTTGGGGA
CATTCAAACGGTTGTCCAGATCCTGAAAGAGGTGATAAAAAAGGGAGCTG
TGACCGAAAAAGAGAAAGCAATGATAACGCCGGAACTGAAACCATTGATC
TTAAGATTCGGCCGCATGTTTGAAAGGGAATTTGCCAAGAACACAAATGC
CTTGGAAGCCTTGCAGATCCTTGTTCATGAGGTTCAAAAATCGAACAGCC
GGAACATGAGACATAAGAGTGCTAAAAGGTCTCACGCAAGCTTTCTAGAC
CAT

BO24860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG34051-RA 672 CG34051-PA 1..669 17..685 3345 100 Plus
CG34051-RB 669 CG34051-PB 1..666 17..685 3265 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG34051-RA 771 CG34051-RA 4..673 16..685 3350 100 Plus
CG34051-RB 768 CG34051-RB 4..670 16..685 3270 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19960404..19960595 502..311 960 100 Minus
2L 23513712 2L 19960167..19960350 685..502 920 100 Minus
2L 23513712 2L 19960854..19961027 189..16 870 100 Minus
2L 23513712 2L 19960659..19960781 312..190 615 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:30:28 has no hits.

BO24860.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-17 10:57:50 Download gff for BO24860.complete
Subject Subject Range Query Range Percent Splice Strand
CG34051-RA 1..669 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:06 Download gff for BO24860.complete
Subject Subject Range Query Range Percent Splice Strand
CG34051-RA 5..673 17..687 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:42 Download gff for BO24860.complete
Subject Subject Range Query Range Percent Splice Strand
CG34051-RA 5..673 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:42 Download gff for BO24860.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19960165..19960350 502..687 98 <- Minus
2L 19960405..19960593 313..501 100 <- Minus
2L 19960659..19960781 190..312 100 <- Minus
2L 19960854..19961026 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:06 Download gff for BO24860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19960165..19960350 502..687 98 <- Minus
arm_2L 19960405..19960593 313..501 100 <- Minus
arm_2L 19960659..19960781 190..312 100 <- Minus
arm_2L 19960854..19961026 17..189 100   Minus

BO24860.pep Sequence

Translation from 16 to 703

> BO24860.pep
MGPRLYPAAILILHCLLLLFLQVDSRGNQNHTQMERQRHLRAHNLHRPPY
DGYDWHKHFNRDAEPKATVAKEKEEKTFKHRSGHLKKMKQTARDISNWSR
ARSAYQKETAELEEWGRKKNITDNELKLFFDGEISTKDKYRLFGDIQTVV
QILKEVIKKGAVTEKEKAMITPELKPLILRFGRMFEREFAKNTNALEALQ
ILVHEVQKSNSRNMRHKSAKRSHASFLDH

BO24860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG34051-PA 223 CG34051-PA 1..223 1..223 1168 100 Plus
CG34051-PB 222 CG34051-PB 1..222 1..223 1152 99.6 Plus