BO24889.complete Sequence
1438 bp assembled on 2010-05-17
GenBank Submission: KX796118
> BO24889.complete
GAAGTTATCAGTCGACATGACCATCATCGAGAGCAACTATATATCCGTGC
GCGAGGAATATCCCGATATAGATAGTGAGGTGCGCGCCATATTGCTGAGC
CACGCCCAGAATGGAATCACGATATCGAGCATCAAGAGTGAATATCGAAA
ACTGACGGGCAATCCATTTCCACTGCACGACAACGTGACGGATTTCCTGC
TGACCATTCCCAATGTGACCGCTGAGTGCAGCGAGTCCGGTAAGCGGATC
TTCAACCTGAAAGCGAGCCTGAAGAACGGTCACCTCCTGGATATGGTGCT
CAACCAGAAAGAGCGCACCAGCGACTACAGCAGCGGAGCTCCGTCCCTGG
AGAACATACCACGAGCACCTCCACGCTACTGGAAGAATCCCTTCAAACGG
AGGGCTCTGTCCCAGCTGAACACCAGCCCGAGGACCGTGCCCAAGATAAC
GGATGAAAAGACCAAGGATATCGCCACCAGGCCGGTTTCGCTGCATCAAA
TGGCCAATGAGGCAGCGGAGTCGAACTGGTGCTACCAGGATAATTGGAAG
CATCTCAACAATTTCTACCAGCAAGCCAGCGTAAATGCGCCAAAAATGCC
AGTACCCATCAACATCTACAGCCCCGATGCCCCAGAGGAACCAATCAATT
TGGCTCCACCTGGGCATCAGCCAAGCTGCAGAACCCAAAGCCAGAAAACC
GAACCGACTGAAAACCGCCATTTGGGCATCTTTGTGCATCCATTTAACGG
CATGAACATAATGAAGAGACGCCACGAAATGACGCCCACGCCAACGATTT
TAACCAGTGGAACCTACAACGATTCTCTGCTGACGATTAACTCGGATTAC
GATGCCTATCTGCTGGACTTTCCGCTTATGGGCGATGATTTTATGCTATA
TCTCGCCCGAATGGAGCTAAAATGCCGATTTAGGCGTCACGAACGCGTCC
TGCAGTCAGGACTTTGTGTATCCGGACTGACGATCAATGGCGCCCGAAAT
CGTTTAAAAAGAGTCCAATTACCCGAGGGTACTCAGATCATCGTCAATAT
CGGATCGGTGGACATTATGCGCGGCAAGCCTTTGGTTCAGATCGAGCACG
ATTTTCGGCTACTGATCAAGGAGATGCACAATATGCGATTGGTGCCGATT
CTAACAAATCTTGCACCGCTGGGCAACTATTGTCACGATAAGGTATTATG
TGACAAAATCTACCGATTCAACAAGTTTATCCGAAGCGAATGCTGTCACC
TAAAGGTCATCGACATACACTCCTGTCTAATCAACGAAAGGGGCGTGGTG
CGATTTGATTGCTTTCAGGCCTCACCACGCCAAGTCACCGGTTCCAAGGA
ACCCTATCTGTTCTGGAACAAAATCGGTCGGCAGCGCGTACTGCAAGTTA
TTGAAACGAGTCTGGAGTATGCAAGCTTTCTAGACCAT
BO24889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| osk-RA | 1821 | CG10901-PA | 413..1818 | 15..1420 | 7030 | 100 | Plus |
| osk-RC | 1407 | CG10901-PC | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| osk-RA | 2869 | CG10901-RA | 433..1838 | 15..1420 | 7030 | 100 | Plus |
| osk-RC | 2869 | CG10901-RC | 433..1838 | 15..1420 | 7030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8936442..8937206 | 556..1320 | 3825 | 100 | Plus |
| 3R | 32079331 | 3R | 8935929..8936346 | 138..555 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 8935558..8935684 | 15..141 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 8937265..8937364 | 1321..1420 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:32:45 has no hits.
BO24889.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-17 10:58:02 Download gff for
BO24889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| osk-RA | 430..1833 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:55 Download gff for
BO24889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| osk-RC | 435..1838 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:23 Download gff for
BO24889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| osk-RC | 435..1838 | 17..1422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:23 Download gff for
BO24889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8935560..8935680 | 17..137 | 100 | -> | Plus |
| 3R | 8935929..8936346 | 138..555 | 100 | -> | Plus |
| 3R | 8936442..8937206 | 556..1320 | 100 | -> | Plus |
| 3R | 8937265..8937364 | 1321..1422 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:55 Download gff for
BO24889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4762987..4763086 | 1321..1422 | 98 | | Plus |
| arm_3R | 4761282..4761402 | 17..137 | 100 | -> | Plus |
| arm_3R | 4761651..4762068 | 138..555 | 100 | -> | Plus |
| arm_3R | 4762164..4762928 | 556..1320 | 100 | -> | Plus |
BO24889.pep Sequence
Translation from 16 to 1438
> BO24889.pep
MTIIESNYISVREEYPDIDSEVRAILLSHAQNGITISSIKSEYRKLTGNP
FPLHDNVTDFLLTIPNVTAECSESGKRIFNLKASLKNGHLLDMVLNQKER
TSDYSSGAPSLENIPRAPPRYWKNPFKRRALSQLNTSPRTVPKITDEKTK
DIATRPVSLHQMANEAAESNWCYQDNWKHLNNFYQQASVNAPKMPVPINI
YSPDAPEEPINLAPPGHQPSCRTQSQKTEPTENRHLGIFVHPFNGMNIMK
RRHEMTPTPTILTSGTYNDSLLTINSDYDAYLLDFPLMGDDFMLYLARME
LKCRFRRHERVLQSGLCVSGLTINGARNRLKRVQLPEGTQIIVNIGSVDI
MRGKPLVQIEHDFRLLIKEMHNMRLVPILTNLAPLGNYCHDKVLCDKIYR
FNKFIRSECCHLKVIDIHSCLINERGVVRFDCFQASPRQVTGSKEPYLFW
NKIGRQRVLQVIETSLEYASFLDH
BO24889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| osk-PA | 606 | CG10901-PA | 139..606 | 1..468 | 2483 | 100 | Plus |
| osk-PC | 468 | CG10901-PC | 1..468 | 1..468 | 2483 | 100 | Plus |
