BO24895.complete Sequence
895 bp assembled on 2010-05-17
GenBank Submission: KX797100
> BO24895.complete
GAAGTTATCAGTCGACATGTCCGTGCGCGTGATCAACGACGAGTCCCACT
TCCAGGCGGAGTTGGCCCAAGCGGGCATTCAATTGGTTGTGGTGGACTTC
ACAGCTTCGTGGTGTGGTCCCTGCAAGCGGATTGCGCCCATCTTCGAGAC
GTTTCCAACAAAGTACCCAAAGGCCATCTTCCTGAAAGTGGATGTGGACA
AGTGCCAGGACACGGCTGCTGGACAGGGCGTTTCGGCCATGCCAACATTC
ATCTTCTACAGGAACAGGACCAAGATCGATCGCGTCCAGGGTGCGGACGT
CAATGGGCTCGAGGCCAAGATCCAGGAGCACATCGGTACATCCGGTGGCG
AGGAGGGGGGCGAGGATTACGGGCAGGGATTGATGGAACTGAATACATTT
ATTTCGAAGCAGGAGTGCGAGTGCCTCAACGAAGCTGATGACCACAACTT
AAAGCACGCCCTGGCCTCCGCCGGTGGCTACCTGCAGTCCGATTGCGATG
AGCAGCTCATCCTGTCCATCACCTTTAATCAGGCTGTGAAGATCCACTCT
TTGAAGTTCAAGGCACCTTCGCACCTGGGTCCCAAGGATGTGAAGCTGTT
CATTAACCAGCCCCGCACGATTGACTTTGACATGGCCGAGTCCATGAACA
GTGTGCAGGATCTAAGCCTGGCTCAGAAGGAGCTGGAGAGTGGAGTGCCC
GTGAATCTGCGCTACGTCAAGTTCCAGAATGTGCAAAACATCCAAATCTT
CGTGAAGAACAATCAGTCAGGTGGCGATGTGACGCAGATTGATTATATCG
GCTTCATCGGTTCCCCCATCATGACCACCAAGATGAACGACTTCAAGCGA
GTGGCTGGCAAGAAGGGCGAGAGCCACGCAAGCTTTCTAGACCAT
BO24895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Txl-RA | 864 | CG5495-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Txl-RA | 1123 | CG5495-RA | 164..1025 | 16..877 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5766009..5766375 | 16..382 | 1835 | 100 | Plus |
| 3L | 28110227 | 3L | 5766432..5766716 | 382..666 | 1425 | 100 | Plus |
| 3L | 28110227 | 3L | 5766774..5766986 | 665..877 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:30:39 has no hits.
BO24895.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-17 10:57:52 Download gff for
BO24895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 164..1024 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:11 Download gff for
BO24895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 165..1025 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:46 Download gff for
BO24895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 165..1025 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:46 Download gff for
BO24895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5766433..5766716 | 383..666 | 100 | -> | Plus |
| 3L | 5766010..5766375 | 17..382 | 100 | -> | Plus |
| 3L | 5766776..5766986 | 667..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:11 Download gff for
BO24895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5759110..5759475 | 17..382 | 100 | -> | Plus |
| arm_3L | 5759533..5759816 | 383..666 | 100 | -> | Plus |
| arm_3L | 5759876..5760086 | 667..879 | 99 | | Plus |
BO24895.pep Sequence
Translation from 16 to 895
> BO24895.pep
MSVRVINDESHFQAELAQAGIQLVVVDFTASWCGPCKRIAPIFETFPTKY
PKAIFLKVDVDKCQDTAAGQGVSAMPTFIFYRNRTKIDRVQGADVNGLEA
KIQEHIGTSGGEEGGEDYGQGLMELNTFISKQECECLNEADDHNLKHALA
SAGGYLQSDCDEQLILSITFNQAVKIHSLKFKAPSHLGPKDVKLFINQPR
TIDFDMAESMNSVQDLSLAQKELESGVPVNLRYVKFQNVQNIQIFVKNNQ
SGGDVTQIDYIGFIGSPIMTTKMNDFKRVAGKKGESHASFLDH
BO24895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Txl-PA | 287 | CG5495-PA | 1..287 | 1..287 | 1493 | 100 | Plus |
| Trx-2-PA | 106 | CG31884-PA | 5..106 | 6..106 | 217 | 40.2 | Plus |
| Trx-2-PB | 106 | CG31884-PB | 5..106 | 6..106 | 217 | 40.2 | Plus |
| dhd-PB | 107 | CG4193-PB | 3..97 | 2..98 | 179 | 38.8 | Plus |
| dhd-PA | 107 | CG4193-PA | 3..97 | 2..98 | 179 | 38.8 | Plus |
