BO24902.complete Sequence
1468 bp assembled on 2010-06-28
GenBank Submission: KX798987
> BO24902.complete
GAAGTTATCAGTCGACATGAATTTCCTGGGATTCGGCCAGTCAGCGGACA
TTGAGATAGTCTTTGATGGAGCTGAGCACAAGACGGCAGAGGTTAAAGGG
GAGGACGGCAAAGTGGAGAAGATGCTGCTATTCTACGACGGGGAGACGGT
ATCCGGCAAGGTGAACGTGACCCTCAAGAAGCCGGGCAGCAAGCTGGAGC
ACCAGGGCATTAAGATCGAATTCATTGGCCAGATCGAACTGTACTACGAC
CGGGGTAACCACCACGAATTCAAGTGTCTAGCGAAGGCCCTGGCCCGCCC
GGGCGATCTCATCCAGAACAACAGCTATCCATTCGATTTCCCCAAAGTGG
AGAAGCAATTCGAGGTGTACGCCGGCTCGAACGTGCGGTTGCGGTACTTC
CTGCGCGCAACCATCGTCAGGCGGATCAGCGACATAACGAAGGAGGTCGA
CATCGCCGTGCACACACTGTGCAGCTACCCGGAGATGAACAACCCCATCA
AGATGGAGGTAGGCATCGAAGACTGCCTGCACATCGAATTCGAGTATAAC
AAAAGCAAGTACCACCTGCGGGACACGATTATCGGCAAGATCTACTTCCT
GTTGGTGCGCATTAAGATCAAGCACATGGAGATTGCGATCATCAAGAAGG
AGAGCACGGGCACGGGCCCCACCATGTTTAACGAAAACGAAACGATTGCC
AAGTACGAGATCATGGACGGAGCGCCCGTCAAAGGCGAGAGCATACCCAT
CCGGGTCTTTCTTGCTGGCTACAATCTCACGCCGACCATGCGGGACATTA
ACAAGAAGTTCTCAGTCAAGTATTTCCTCAACCTTGTGCTGATGGACACC
GAGGACCGGCGCTACTTCAAACAACAGGAGATCACGCTGTGGCGCAAGGC
AGACAAACCGCGTTACCATGGCGCTCAGCAGCACCAGCAACAGCAGCACC
AACACGTTCCCCTGCACGCTCCGCCGCACCTGGTCAGCGGTCCTGCTGCG
CCCACAGTGGCTCACTCGCTGATCAGCTCGAGCACGGACAGCGGAGAGGT
GGGAGGAGCACCGACAGCGCCGGGCACTGCAGGATCTGAGTCCAAGATGG
GTCTGTTTACCAGGGAGAGCCCCAACCAGGAGTTCAGCCAACAGCAAATG
GATTCTCCGCCGCTGACGCCCACGCCGTCGACCGCATCCGTTGCAGTTGC
AGTCCCCACAGCGGCGTCATCTGTTTCAGAACCAGCTCCCGAGCGGGGCA
TAGGCGATGGAGCCGCAGCGGCCACCACAAGCGCCTCGCCCGTAGCTATG
CTCTCCAGTTCGCCACCGCCATTGCTGCCAGTATCGCCGCTCTCCCGATC
GGAAACTGAAGCGTCGGAGCAAGTACAACCGGAGGATGAGGACCTCGATG
CAATTACGCCCAATACGAAAAAGACCGGTGCAACGCCGTTGGCCACCGAT
GCAAGCTTTCTAGACCAT
BO24902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps26-RA | 1437 | CG14804-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps26-RA | 2543 | CG14804-RA | 286..1719 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1874359..1875650 | 159..1450 | 6460 | 100 | Plus |
| X | 23542271 | X | 1874138..1874284 | 17..163 | 735 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6943 | 926..1088 | 154 | 61 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3233..3307 | 878..954 | 127 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2364 | 926..980 | 122 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2380 | 926..954 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2395 | 926..954 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6861..6912 | 915..966 | 116 | 69.2 | Plus |
BO24902.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:10:06 Download gff for
BO24902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14804-RA | 276..1709 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:08 Download gff for
BO24902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps26-RA | 286..1719 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:26 Download gff for
BO24902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps26-RA | 286..1719 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:26 Download gff for
BO24902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1874138..1874281 | 17..160 | 100 | -> | Plus |
| X | 1874361..1875650 | 161..1452 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:08 Download gff for
BO24902.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1768171..1768314 | 17..160 | 100 | -> | Plus |
| arm_X | 1768394..1769683 | 161..1452 | 99 | | Plus |
BO24902.pep Sequence
Translation from 16 to 1468
> BO24902.pep
MNFLGFGQSADIEIVFDGAEHKTAEVKGEDGKVEKMLLFYDGETVSGKVN
VTLKKPGSKLEHQGIKIEFIGQIELYYDRGNHHEFKCLAKALARPGDLIQ
NNSYPFDFPKVEKQFEVYAGSNVRLRYFLRATIVRRISDITKEVDIAVHT
LCSYPEMNNPIKMEVGIEDCLHIEFEYNKSKYHLRDTIIGKIYFLLVRIK
IKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRVFLA
GYNLTPTMRDINKKFSVKYFLNLVLMDTEDRRYFKQQEITLWRKADKPRY
HGAQQHQQQQHQHVPLHAPPHLVSGPAAPTVAHSLISSSTDSGEVGGAPT
APGTAGSESKMGLFTRESPNQEFSQQQMDSPPLTPTPSTASVAVAVPTAA
SSVSEPAPERGIGDGAAAATTSASPVAMLSSSPPPLLPVSPLSRSETEAS
EQVQPEDEDLDAITPNTKKTGATPLATDASFLDH
BO24902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps26-PA | 478 | CG14804-PA | 1..478 | 1..478 | 2476 | 100 | Plus |
