BO24908.complete Sequence
1849 bp assembled on 2010-06-28
GenBank Submission: KX799880
> BO24908.complete
GAAGTTATCAGTCGACATGTCGCTGAAACACCAGAAGCAATCCTACCAAC
CGCTCCCAACGGCGGCCGCCATGGACAATCCGGCGATGATCCAGAGCAGC
GGTAGCAGTGGGAGCAGCTCCTCTGAGGAGGGCGGGAGTCGTGAGGATGT
GGCCAATCTATCGCCGCTCGGACTGCCTACGACCTACTCGTCACAGCAAT
TGATGCCCTCGGATACGGACAGCATGGAGGAGGAGCGGCACCGACTGCGT
CCCCACCACCATCACCACCACCCACTGGGCGAGCACCACCACATCCCGGG
CATACCACCATCCGCCGTCGTGCCATCGCGTCTCTCCAGCGTGGGCAGAT
CGCAGTGGTTCACCGTTACCGTGCTATGCTTCGTCAACCTCATCAACTAC
ATGGATCGCTTTACGATCGCAGGAGTTCTCACAGATGTCCGAAATGATTT
CGATATTGGCAATGATAGTGCCGGACTTCTCCAGACGGTCTTCGTTATCT
CGTACATGGTATGCGCCCCCATCTTCGGCTATCTGGGCGATCGTTACTCC
CGCCCCTGGATAATGGCGGTGGGCGTGGGTCTGTGGAGCACCACCACCCT
ACTGGGGTCGTTCATGAAGCAGTTTGGATGGTTCATCGCCTTCAGAGCGC
TGGTCGGGATCGGCGAGGCATCGTACAGTACCATCGCACCGACGATTATC
TCGGATCTGTTCGTGCACGACATGCGCTCCAAGATGCTGGCACTGTTCTA
CTTTGCCATACCCGTGGGATCCGGTCTGGGATACATTGTGGGATCCAAGA
CAGCGCACCTGGCCAACGATTGGCGCTGGGCTCTGAGGGTCACGCCCATT
CTGGGCATTGTGGCAGTTTTCCTCATTTTGCTGATCAAGGATCCGGTGCG
GGGTCACAGCGAGGGATCGCACAATTTGGAGGCCACTACCTACAAGCAGG
ACATCAAGGCGTTGGTCAGGAACCGTTCCTTCATGCTCTCCACGGCTGGA
TTCACGTGCGTTGCCTTCGTGGCCGGAGCACTGGCCTGGTGGGGACCTTC
CTTCATCTATCTAGGCATGAAGATGCAGCCCGGCAACGAGAACATTGTCC
AGGACGACATCTCGTACAAGTTTGGTCTGGTGGCCATGTTGGCCGGACTC
ATCGGAGTCCCGTTGGGCTCCTTTCTGGCCCAGCGATTGAGGGGTCGCTA
CGAGAACTGTGATCCGTACATCTGTGCGGTGGGACTTTTCATCTCGGCTC
CGATGGTCTTCGCTGCTCTCGTGGTGCCGCAGACAAGCGAGAGCCTCTGC
TTTTTCTTCGTTTTCGTGGCCCAGGTGGCACTGAACCTGTGCTGGTCCAT
TGTAGCCGACATCCTACTGTATGTGGTGGTTCCCACGCGACGTTCAACAG
CCGAGGCCTTCCAAATCCTCATCTCACACGCACTCGGTGATGCCGGCAGT
CCGTATTTGGTTGGAGCAATCTCCGAGGCCATCATGAAACACCTGCACAA
GAACCCCAGCGACTCTGGACTGACCACCGAGCTGCGAAGCATGTCCCAAG
TGGCAGGTTCCGCGATCAGTAATGCCACCCAGGTGATCGCGGAAGCCACC
ACCAGTTTGATGGAAACAGCACGCTCGTCAGCCTCTCAGGAATACTCTGA
TGTGGAGCAATTCGAGGGACTGCAATATGCGCTCTTCTCCACCAGTTTTG
TGGAGGTGCTGGGCGGCATTTTCTTCATATTCACCGCCTGCTTTATCATC
AAAGACAAGTACAATGCCACACGAGGACTGCAAGATGCCACGGCTCAGCA
ACAGCAGCGGGATGAGCGCGGTCAGATTGCCGCAAGCTTTCTAGACCAT
BO24908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spin-RC | 1818 | CG8428-PC | 1..1815 | 17..1831 | 9075 | 100 | Plus |
spin-RB | 1893 | CG8428-PB | 1..1768 | 17..1784 | 8840 | 100 | Plus |
spin-RA | 1818 | CG8428-PA | 1..1167 | 17..1183 | 5475 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spin-RC | 3198 | CG8428-RC | 397..2211 | 17..1831 | 9075 | 100 | Plus |
spin-RB | 3394 | CG8428-RB | 397..2164 | 17..1784 | 8840 | 100 | Plus |
spin-RA | 3007 | CG8428-RA | 397..1563 | 17..1183 | 5475 | 97.9 | Plus |
spin-RB | 3394 | CG8428-RB | 2360..2407 | 1784..1831 | 240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16125377..16125783 | 17..423 | 2035 | 100 | Plus |
2R | 25286936 | 2R | 16131539..16131899 | 420..780 | 1805 | 100 | Plus |
2R | 25286936 | 2R | 16132308..16132635 | 780..1107 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 16132829..16133090 | 1108..1369 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 16136187..16136360 | 1469..1642 | 870 | 100 | Plus |
2R | 25286936 | 2R | 16136425..16136566 | 1643..1784 | 710 | 100 | Plus |
2R | 25286936 | 2R | 16136026..16136125 | 1369..1468 | 500 | 100 | Plus |
2R | 25286936 | 2R | 16137203..16137251 | 1783..1831 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:49:12 has no hits.
BO24908.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-28 11:09:38 Download gff for
BO24908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spin-RC | 395..2209 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:13 Download gff for
BO24908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spin-RC | 397..2211 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:30 Download gff for
BO24908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spin-RC | 397..2211 | 17..1833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:30 Download gff for
BO24908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16125377..16125782 | 17..422 | 100 | -> | Plus |
2R | 16131542..16131899 | 423..780 | 100 | -> | Plus |
2R | 16132309..16132635 | 781..1107 | 100 | -> | Plus |
2R | 16132829..16133090 | 1108..1369 | 100 | -> | Plus |
2R | 16136027..16136125 | 1370..1468 | 100 | -> | Plus |
2R | 16136187..16136360 | 1469..1642 | 100 | -> | Plus |
2R | 16136425..16136566 | 1643..1784 | 100 | -> | Plus |
2R | 16137205..16137251 | 1785..1833 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:13 Download gff for
BO24908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12023930..12024071 | 1643..1784 | 100 | -> | Plus |
arm_2R | 12024710..12024756 | 1785..1833 | 95 | | Plus |
arm_2R | 12012882..12013287 | 17..422 | 100 | -> | Plus |
arm_2R | 12019047..12019404 | 423..780 | 100 | -> | Plus |
arm_2R | 12019814..12020140 | 781..1107 | 100 | -> | Plus |
arm_2R | 12020334..12020595 | 1108..1369 | 100 | -> | Plus |
arm_2R | 12023532..12023630 | 1370..1468 | 100 | -> | Plus |
arm_2R | 12023692..12023865 | 1469..1642 | 100 | -> | Plus |
BO24908.pep Sequence
Translation from 16 to 1849
> BO24908.pep
MSLKHQKQSYQPLPTAAAMDNPAMIQSSGSSGSSSSEEGGSREDVANLSP
LGLPTTYSSQQLMPSDTDSMEEERHRLRPHHHHHHPLGEHHHIPGIPPSA
VVPSRLSSVGRSQWFTVTVLCFVNLINYMDRFTIAGVLTDVRNDFDIGND
SAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFM
KQFGWFIAFRALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPV
GSGLGYIVGSKTAHLANDWRWALRVTPILGIVAVFLILLIKDPVRGHSEG
SHNLEATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSFIYLG
MKMQPGNENIVQDDISYKFGLVAMLAGLIGVPLGSFLAQRLRGRYENCDP
YICAVGLFISAPMVFAALVVPQTSESLCFFFVFVAQVALNLCWSIVADIL
LYVVVPTRRSTAEAFQILISHALGDAGSPYLVGAISEAIMKHLHKNPSDS
GLTTELRSMSQVAGSAISNATQVIAEATTSLMETARSSASQEYSDVEQFE
GLQYALFSTSFVEVLGGIFFIFTACFIIKDKYNATRGLQDATAQQQQRDE
RGQIAASFLDH
BO24908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spin-PC | 605 | CG8428-PC | 1..605 | 1..605 | 3120 | 100 | Plus |
spin-PB | 630 | CG8428-PB | 1..598 | 1..598 | 3043 | 98.8 | Plus |
spin-PA | 605 | CG8428-PA | 1..605 | 1..605 | 2906 | 92.9 | Plus |
spin-PD | 630 | CG8428-PD | 1..598 | 1..598 | 2829 | 91.6 | Plus |
spin-PE | 402 | CG8428-PE | 1..365 | 1..365 | 1918 | 99.7 | Plus |