BO24909.complete Sequence
1048 bp assembled on 2010-07-02
GenBank Submission: KX799563
> BO24909.complete
GAAGTTATCAGTCGACATGAATCTGCCGGAACGCAGCCGTTTTGTGATCT
ACGCCGTCGGTATCTTCGTATGCTACTTCTTGTACGGAATTGTCCAGGAG
AAGTTGACGCGGGGCCGCTACGGCGAGGAGGTACAGACAGATGGATCCGT
GGGAGAGCGCTTCACTTACGCCTTGGCCCTTGTTTGGGTGCAGTGCCTCT
GCAACTATGTGTTTGCCAAGGTGCTGCTGACCATTAGGCCGCAAAAGGAG
GACACCACCAACGCGGGCTCCTACGTGGCCTGTTCGCTGACCTATCTTCT
GGCCATGGTCTCCACCAATATGGCCATGCGCTGGGTTCCCTATCCCACTG
CTGTGGTGGGTAAATCCGCCAAGCCCATCCCCGTCATGATCCTGGGCGTG
CTGATTGGTCGCAAATCCTACAGCTGGACGCGCTATGCTTGCGTATTGAC
CATTGTCCTGGGAGTTATTCTCTTTATGTACAAGGAGGGCAAGGTGTCCA
ATTTGCCGGCTGAGACCACGCTTCTCGGCGAGGTGCTGCTCTTCCTCAGT
TTGTCAATGGACGGATTGACTGGAGCCGTTCAGGAACGCATCCGAGCGGC
CAGCGCGCCTTCCGGTCAGCAGATGATGAGGGCCATGAACTTCTGGAGCA
CCCTGATGCTTGGCGTTGCCATGGTATTTACAGGTGAGGCCAAGGAATTC
ATGTACTTCACCATCCGACATCCCGAGGCGTGGACCCATTTATCGCTGAT
AGCTGTGTGCGGCGTGCTCGGTCAGTTCTTCATCTTTCTGATGGTGGCCA
GCTTTGGACCTCTGGCCTGCTCCGTGGTTACGACGACGCGAAAGTTCTTT
ACCGTCCTGTGCTCCGTTCTGCTGTTCGGAAACGTCCTGATTGCCCGCCA
GTGGCTTGGAGCTGTCCTGGTGTTCGCCGCACTCTTTGTGGACATGCTGT
ACGGCAAGAAGGCGCCACTGGCTACGGCCAAAAAGCCGCCAGTCGAGGGA
AAGCTATCCGAGGAAAAGAAACTGAATTCGGCAAGCTTTCTAGACCAT
BO24909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meigo-RB | 1017 | CG5802-PB | 1..1014 | 17..1030 | 5070 | 100 | Plus |
| meigo-RA | 1017 | CG5802-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meigo-RB | 1868 | CG5802-RB | 525..1539 | 16..1030 | 5075 | 100 | Plus |
| meigo-RA | 1512 | CG5802-RA | 169..1183 | 16..1030 | 5075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21139117..21139584 | 221..688 | 2340 | 100 | Plus |
| 3R | 32079331 | 3R | 21139687..21140036 | 681..1030 | 1750 | 100 | Plus |
| 3R | 32079331 | 3R | 21138860..21139065 | 16..221 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:23:40 has no hits.
BO24909.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:34:47 Download gff for
BO24909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5802-RB | 526..1539 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:18 Download gff for
BO24909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meigo-RA | 170..1183 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:20 Download gff for
BO24909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meigo-RA | 170..1183 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:20 Download gff for
BO24909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21138861..21139065 | 17..221 | 100 | -> | Plus |
| 3R | 21139690..21140036 | 684..1032 | 99 | | Plus |
| 3R | 21139118..21139579 | 222..683 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:18 Download gff for
BO24909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16964583..16964787 | 17..221 | 100 | -> | Plus |
| arm_3R | 16964840..16965301 | 222..683 | 100 | -> | Plus |
| arm_3R | 16965412..16965758 | 684..1032 | 99 | | Plus |
BO24909.pep Sequence
Translation from 16 to 1048
> BO24909.pep
MNLPERSRFVIYAVGIFVCYFLYGIVQEKLTRGRYGEEVQTDGSVGERFT
YALALVWVQCLCNYVFAKVLLTIRPQKEDTTNAGSYVACSLTYLLAMVST
NMAMRWVPYPTAVVGKSAKPIPVMILGVLIGRKSYSWTRYACVLTIVLGV
ILFMYKEGKVSNLPAETTLLGEVLLFLSLSMDGLTGAVQERIRAASAPSG
QQMMRAMNFWSTLMLGVAMVFTGEAKEFMYFTIRHPEAWTHLSLIAVCGV
LGQFFIFLMVASFGPLACSVVTTTRKFFTVLCSVLLFGNVLIARQWLGAV
LVFAALFVDMLYGKKAPLATAKKPPVEGKLSEEKKLNSASFLDH
BO24909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meigo-PB | 338 | CG5802-PB | 1..338 | 1..338 | 1732 | 100 | Plus |
| meigo-PA | 338 | CG5802-PA | 1..338 | 1..338 | 1732 | 100 | Plus |
| sll-PB | 465 | CG7623-PB | 151..441 | 15..308 | 295 | 25.8 | Plus |
| sll-PA | 465 | CG7623-PA | 151..441 | 15..308 | 295 | 25.8 | Plus |
| Papst2-PA | 396 | CG7853-PA | 60..371 | 7..321 | 210 | 25.6 | Plus |
