BO24914.complete Sequence
1765 bp assembled on 2010-06-25
GenBank Submission: KX799738
> BO24914.complete
GAAGTTATCAGTCGACATGGAAACTTGCGGCCTTATTTGTGTGAGCAGGG
ACTACGAGAAGTTCCTGATGCGCTGCTCCTACTGTCCAACGGACGTGGAG
GTGGCCCAGTGGCAGGAGTTTGTGCTGCACATCCGCAACGTGCATAGCAA
AGTAAGGAGCATGGAAGACGACTTCGAGCCAGTGGGGGAAAATTCTACGG
AGTCTGGGCACGTAGATCCTCCAGAGGAGAAACCCCAAGCGGAAGAGTCG
ATATTCCAGCAAGACGAATCGGCGGACGGAGCCTGTGTACAGCTGCATAT
TGACGCAGTGCGTTCGTCGACAAACGAGACTGAGGAGTCGGACGTATCTT
TGGTTACAGATGAAGAAGAATCCGTCCAGGACGAGGATCCAAGTGAACCA
GCTCTTGATGATGCCAATTTAAAAACCACACCCACATACAAGTTTCATCC
ATCCTTCTTTCGCCGAGATCACCGAACCATAAAGTTCATAGAGATCTACA
AGGAACACCCGTGCCTTTGGAATCCCGCTCACAGCGACTACAAGGAACCC
AAGAAATGCAAAGAAGCCCTGAAGCGTATGGCCATTGACTTGGAGGCAAC
TGTATCCGTATTCCTGAACGAGATGGCCTTAAAGCTGGCCATCAAGAAAG
TCCACATGCAGTTCAACACCGTGCACAAGCGGGTGGTGTCTGGAAAACAG
AAACCTCAATCGCTGGCTTTCAGTATATACAAATTGTGTTGCTTCTTGAA
CGCTAGCAACGATGAAGAAGGGGCTACGAATAACGAAAAAATTAAGCTTG
ATTTCTCCAAGAAAAACAAGCTGACTACCGACCTGATAGAGATGTACGCA
AACTTTCCGCAGCTATACGACTCCAACCACAAGGAGTTCTCCAATATGAG
CTCTCGAAAACAGGCATACGAGAGCATGGCTGCGGAAATCTCAGTGCCCA
ATGTGGACATCAACAGCGATGACATATTCCGCGCCATCCAGAATCTCCGC
CAATGGTACTACAAGAACACTAAGCATGCCATTTATGCCGGAAGTACAGC
CGAGAAGTTCTACCTAGAGGTGTGTCGGTTCATGCCTGCAAAGATGTACA
AGCAGCGGCTGGTCTGCGAATTTTGCCACCAGATTACGTCCTCGGATCAT
GTCCTGCAGTCGCACATCTTCAAGGCGCACAACATCGGCGAGCTGCCCTT
CAAATGCACCTTGTGCGACCGAAGTTTTGTGGGACGTTGCGAGCTGGCTA
ATCACATACAGCGGGTCCATATCGGCAAGACCCACAAGTGCACCCATTGT
GAGCGTTCATTCGCTGTGATGTCGGACCTGCAGCTGCACATCCGTACGCA
CACTGGCCACAAGCCTTACGTCTGCGAGCATTGCGGCAAGGCCTTCCGAC
TGCGGTCCCAAATGACGCTCCACGTCACGGCTATTCACACGAAGATCAGA
GCCTTCAAGTGCACCATGTGTCCCAAAGACTTTGTGAAAAAGGTCGACTT
ATCGGATCACATCAAGGGCCATTTAAACATCCGCGACAAAATCTGCAGTG
TGTGCGGTAAGGGATTCACCAGCTGCCATGCACTCATCCGACACCGGCAG
ATTCACTCCGAGGTGAAGAAGTTTGTGTGCAAACTCTGCGACTCCAGGTT
CTCCCAGTTTGTGGGTCTTAATACGCACATGAAGCGCACCCACAACATTC
TTCGTAATAATTCACAAAAGGGTAAAGATGCTGTGGATGCAGAGAACGCA
AGCTTTCTAGACCAT
BO24914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1602-RA | 1734 | CG1602-PA | 1..1731 | 17..1747 | 8655 | 100 | Plus |
| az2-RA | 1782 | CG1605-PA | 1434..1572 | 1408..1546 | 185 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1602-RA | 1901 | CG1602-RA | 77..1807 | 17..1747 | 8655 | 100 | Plus |
| az2-RA | 2006 | CG1605-RA | 1488..1626 | 1408..1546 | 185 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7517017..7517969 | 1747..795 | 4765 | 100 | Minus |
| 2R | 25286936 | 2R | 7518435..7518860 | 442..17 | 2130 | 100 | Minus |
| 2R | 25286936 | 2R | 7518025..7518380 | 796..441 | 1780 | 100 | Minus |
| 2R | 25286936 | 2R | 7511002..7511140 | 1546..1408 | 185 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:45:36 has no hits.
BO24914.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:11 Download gff for
BO24914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1602-RA | 62..1792 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:51 Download gff for
BO24914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1602-RA | 77..1807 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:28 Download gff for
BO24914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1602-RA | 77..1807 | 17..1749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:28 Download gff for
BO24914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7517014..7517967 | 797..1749 | 99 | <- | Minus |
| 2R | 7518025..7518378 | 443..796 | 100 | <- | Minus |
| 2R | 7518435..7518860 | 17..442 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:51 Download gff for
BO24914.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3404519..3405472 | 797..1749 | 99 | <- | Minus |
| arm_2R | 3405530..3405883 | 443..796 | 100 | <- | Minus |
| arm_2R | 3405940..3406365 | 17..442 | 100 | | Minus |
BO24914.pep Sequence
Translation from 16 to 1765
> BO24914.pep
METCGLICVSRDYEKFLMRCSYCPTDVEVAQWQEFVLHIRNVHSKVRSME
DDFEPVGENSTESGHVDPPEEKPQAEESIFQQDESADGACVQLHIDAVRS
STNETEESDVSLVTDEEESVQDEDPSEPALDDANLKTTPTYKFHPSFFRR
DHRTIKFIEIYKEHPCLWNPAHSDYKEPKKCKEALKRMAIDLEATVSVFL
NEMALKLAIKKVHMQFNTVHKRVVSGKQKPQSLAFSIYKLCCFLNASNDE
EGATNNEKIKLDFSKKNKLTTDLIEMYANFPQLYDSNHKEFSNMSSRKQA
YESMAAEISVPNVDINSDDIFRAIQNLRQWYYKNTKHAIYAGSTAEKFYL
EVCRFMPAKMYKQRLVCEFCHQITSSDHVLQSHIFKAHNIGELPFKCTLC
DRSFVGRCELANHIQRVHIGKTHKCTHCERSFAVMSDLQLHIRTHTGHKP
YVCEHCGKAFRLRSQMTLHVTAIHTKIRAFKCTMCPKDFVKKVDLSDHIK
GHLNIRDKICSVCGKGFTSCHALIRHRQIHSEVKKFVCKLCDSRFSQFVG
LNTHMKRTHNILRNNSQKGKDAVDAENASFLDH
BO24914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1602-PA | 577 | CG1602-PA | 1..577 | 1..577 | 3100 | 100 | Plus |
| az2-PA | 593 | CG1605-PA | 1..578 | 1..565 | 1038 | 38.6 | Plus |
| CG1603-PB | 586 | CG1603-PB | 1..583 | 1..530 | 805 | 31.4 | Plus |
| CG1603-PA | 586 | CG1603-PA | 1..583 | 1..530 | 805 | 31.4 | Plus |
| rgr-PA | 856 | CG8643-PA | 427..848 | 152..560 | 481 | 27.5 | Plus |
