BO24915.complete Sequence
2113 bp assembled on 2010-06-25
GenBank Submission: KX794680
> BO24915.complete
GAAGTTATCAGTCGACATGGCTTTCCGTGGTAACCAGAACCGCAACCGCA
ATTTTGGAGGTGGCAACAACAACTATGGTGGACCCATGGGCGCCAACCGC
ATGGGCGGTATGAACATGTCGCCTTGGGAATCGCAGAATCCCGGCGGCGG
ACAGTTTGGTAACAACATGCGACAGGGTGGCGGTCAGATGAACGCCCAGG
CCATCAACTTGGCCAACAATCTGCTGAACAATCTGTTCAGGAACCAGAAT
CCACCATCGCTTCTCGACTTGCCCCGCGGCGGCGGTGGCATGGGAAATCG
CAACCAACGTGGTGGCCCGATGGTCAGTCGCGGCGGCGGTGCCGGCAATC
GTCTCAATAACCGTCGTGGCCAGGGAGGTGGCTTCCAAAATCGTGGCGCC
ACTGGTAGTGGACCCAAGCCCCCGCCAAAGCAGGGCGGCGGCGGTATTCG
CAAGCAAAATGCTTTTGATCGTGCCAAGAAACTTTTGGCTAAAAATGCCA
ACCAAAATAAAAAGAAGGAACCCACTCCTGGCGAAAAGAAAATCGAGAGC
CCTACCAAGGAGTCTCCATACGCTAGTGTGCCGAACGACATGTTCTACTG
CCATCTGTGCAAGAAGCACATGTGGGATGCCAACTCTTTCGAGAACCACA
TCAAGGGCCGCACCCATCTGATGATGCGTGAGGGCATTGAGGAGAGCTAT
CGCCTCAAGGCCAACATGATCCGTCAGGAGGCTAAGATCGCAGAGCAGCT
CAAGTCGATCGAGTTTGACCGCTTGAAGCGCATGGGCAAAAGCAAGCAGC
GTCAGCTGGACTACTGCACCATGTGCGACCTGAACTTCCATGGTCACATC
TCGACCCATCGCAAGTCGGAGGGACATTTGCAGCTGAAGAAGTTCTTGCA
CCCCAAGTGCATTGAGTGCAACAAGGAGTTCGCCACTCGCATTGACTACG
ATACTCATCTGCTGTCCGCCGAGCATCTGAAGAAGGCTGCCGAGAACAAC
ACCAAGGTGGGTGAGCGCAAGCGCCAGACCTTGCCCATCAGCACCGAAGA
AGAGGAGACCCGCGATTTGCGCCTGCCCCAGAAGCGCAAGAAGAAGCCGG
TCAAGAAGGAGGGCGAAGCAGCCGATGGCGAGGCTAAGAAGGAGGGTGCC
GGCGATGGCGAGGGTGCCGAAGGTGATGAAGCCGAGGGAGAAGAGGCCAA
GGAGGGTGAGGAAGCTGCTGACGAAACAAAGGAGGGCGATGAGCTAAACG
AGAGCCAAGAGGAAGAGGAAGTGGCACTGCCCGTGGACCCCGAGGACTGC
ATCCTTGACTTCAACGACGGCGATGAGATCCCCAGCGAGGTGGATACCCG
CCTACCTAAGTACAACTGGCAGCGTGCTGTCGGTCCCGGTCTGATCTCCA
AGCTGGAGTGCTATGAGTGCTCGGTGTGCAGCAAGTTCTTCGACACCGAG
GTGACCGCCGAGATTCACTCCCGTACGGCGACTCATCACCGCAACTTCTT
GAAGTTTATCAACGAGAAATCAAGCGATACCAAGATCGCACAGAAGCGCG
CAGCTGCCGCCCTGGAGGAGAATGAGCGTAAGAAGCGCAAGGTTGAGGAG
GCAGAGGCTCCGGCTGCCGAGGGCGCAGCCGAGGAAACCACCGAAGGCGC
TGAGGGTGAGCTGTACGATCCATCGGAAGCCACTGGCGATGACGAGGACG
TGGAGATGGTGGATGATAATGCTGAGGGCGAGGGCGAAGGCGAAGGTGAC
GAGGAAGCCGAGGCTGAGGTCGAGGAAGATGGCGCCGGCCAGGACAACGG
CGAAGAGGAGATGGAAGCCCAGGAGGAAGAGGGTCAGGAGGGCGAGCAAG
AGCCCGAACCTGAGCCAGCTCCAGTCCAAACTCCTGCCCCGGCTGAACCT
GCACCACCAGCCAAGACCCCAGCCAAGACTCCGACCAAGGCAGCTGCTCC
AGCCGCTGTTGCCAGTCCCGCAGCTGCGGCAACGTCGGCAGACGCCTCTC
CATCTCCGGCCAAGAAGGCAACGCCTGCTCGCGCTGCCGCCGGAGCCAAG
GCCACGCCGCAGCGACAACGCGCCCGCGGTCGCTACAATCGCTACGCAAG
CTTTCTAGACCAT
BO24915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-RB | 2151 | CG6143-PB | 68..2148 | 15..2095 | 10390 | 100 | Plus |
| Pep-RD | 2082 | CG6143-PD | 1..2079 | 17..2095 | 10380 | 100 | Plus |
| Pep-RC | 2082 | CG6143-PC | 1..2079 | 17..2095 | 10380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-RD | 2626 | CG6143-RD | 141..2221 | 15..2095 | 10390 | 100 | Plus |
| Pep-RC | 2691 | CG6143-RC | 206..2286 | 15..2095 | 10390 | 100 | Plus |
| Pep-RB | 2792 | CG6143-RB | 307..2387 | 15..2095 | 10390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17638508..17640055 | 2095..548 | 7725 | 99.9 | Minus |
| 3L | 28110227 | 3L | 17643363..17643667 | 319..15 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 17641026..17641256 | 549..319 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:45:30 has no hits.
BO24915.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:10 Download gff for
BO24915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RC | 203..2281 | 17..2097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:49 Download gff for
BO24915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 309..2387 | 17..2097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:26 Download gff for
BO24915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 309..2387 | 17..2097 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:26 Download gff for
BO24915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17638506..17640053 | 550..2097 | 99 | <- | Minus |
| 3L | 17641026..17641255 | 320..549 | 100 | <- | Minus |
| 3L | 17643363..17643665 | 17..319 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:49 Download gff for
BO24915.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17631606..17633153 | 550..2097 | 99 | <- | Minus |
| arm_3L | 17634126..17634355 | 320..549 | 100 | <- | Minus |
| arm_3L | 17636463..17636765 | 17..319 | 100 | | Minus |
BO24915.pep Sequence
Translation from 16 to 2113
> BO24915.pep
MAFRGNQNRNRNFGGGNNNYGGPMGANRMGGMNMSPWESQNPGGGQFGNN
MRQGGGQMNAQAINLANNLLNNLFRNQNPPSLLDLPRGGGGMGNRNQRGG
PMVSRGGGAGNRLNNRRGQGGGFQNRGATGSGPKPPPKQGGGGIRKQNAF
DRAKKLLAKNANQNKKKEPTPGEKKIESPTKESPYASVPNDMFYCHLCKK
HMWDANSFENHIKGRTHLMMREGIEESYRLKANMIRQEAKIAEQLKSIEF
DRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRKSEGHLQLKKFLHPKCIE
CNKEFATRIDYDTHLLSAEHLKKAAENNTKVGERKRQTLPISTEEEETRD
LRLPQKRKKKPVKKEGEAADGEAKKEGAGDGEGAEGDEAEGEEAKEGEEA
ADETKEGDELNESQEEEEVALPVDPEDCILDFNDGDEIPSEVDTRLPKYN
WQRAVGPGLISKLECYECSVCSKFFDTEVTAEIHSRTATHHRNFLKFINE
KSSDTKIAQKRAAAALEENERKKRKVEEAEAPAAEGAAEETTEGAEGELY
DPSEATGDDEDVEMVDDNAEGEGEGEGDEEAEAEVEEDGAGQDNGEEEME
AQEEEGQEGEQEPEPEPAPVQTPAPAEPAPPAKTPAKTPTKAAAPAAVAS
PAAAATSADASPSPAKKATPARAAAGAKATPQRQRARGRYNRYASFLDH
BO24915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-PD | 693 | CG6143-PD | 1..693 | 1..693 | 3669 | 100 | Plus |
| Pep-PC | 693 | CG6143-PC | 1..693 | 1..693 | 3669 | 100 | Plus |
| Pep-PB | 716 | CG6143-PB | 24..716 | 1..693 | 3669 | 100 | Plus |
| Pep-PA | 109 | CG6143-PA | 1..101 | 1..101 | 561 | 100 | Plus |
