BO24917.complete Sequence
1162 bp assembled on 2010-06-03
> BO24917.complete
GAAGTTATCAGTCGACATGTATCACCTGAAGATCAACCCTAAGGAGTACT
CCGAGCACGAGCTGGAGAAGATCACCCGTCGCTTCACCCTTGAGTTGGCC
AAGAAGGGCTTCATTGGACCCGGTGTCGATGTGCCCGCCCCCGACATGGG
AACCGGTGAGCGCGAGATGTCCTGGATTGCCGATACTTATGCCAAGACCA
TCGGTCACCTGGACATCAATGCTCATGCCTGTGTCACCGGCAAGCCCATC
AACCAGGGCGGTATCCACGGACGCGTCTCGGCCACCGGTCGCGGTGTCTT
CCACGGCCTGGAGAACTTCATCAACGAGGCCAACTACATGAGCCAGATCG
GCACCACTCCCGGCTGGGGCGGCAAGACCTTCATCGTCCAGGGCTTCGGT
AACGTGGGCCTGCACACCACTCGCTATCTGACCCGCGCCGGAGCCACCTG
CATCGGTGTCATTGAGCACGACGGCACTCTGTACAACCCGGAGGGCATTG
ACCCTAAGCTGCTGGAGGACTACAAGAACGAGCACGGCACCATTGTGGGC
TACCAGAACGCCAAGCCCTACGAGGGCGAGAACCTCATGTTCGAGAAGTG
CGACATCTTCATTCCCGCTGCCGTCGAGAAGGTCATCACCAGCGAGAATG
CCAACCGCATTCAAGCTAAGATCATTGCCGAGGCTGCCAACGGCCCCACC
ACCCCCGCTGCCGACAAGATCCTCATCGATCGCAACATCCTGGTCATTCC
CGATCTGTACATCAACGCCGGTGGTGTCACCGTCTCCTTCTTCGAGTGGC
TGAAGAACCTGAACCACGTCTCGTACGGTCGCCTGACCTTCAAGTATGAG
CGCGAGTCCAACTACCATCTGCTTGAATCCGTTCAAGAGTCCCTGGAGCG
TCGCTTCGGCCGTGTGGGCGGTCGCATCCCCGTGACCCCCTCCGAGTCGT
TCCAGAAGCGCATCTCCGGCGCCTCCGAGAAGGATATCGTGCACTCCGGC
CTGGACTACACCATGGAGCGCTCCGCCCGCGCCATCATGAAGACAGCCAT
GAAGTACAACCTGGGCCTGGACCTCAGAACCGCTGCCTACGTCAACTCCA
TTGAGAAGATCTTCACCACATACCGCGATGCCGGCCTGGCCTTCGCAAGC
TTTCTAGACCAT
BO24917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdh-RD | 1176 | CG5320-PD | 55..1173 | 26..1144 | 5595 | 100 | Plus |
| Gdh-RF | 1650 | CG5320-PF | 529..1647 | 26..1144 | 5595 | 100 | Plus |
| Gdh-RB | 1215 | CG5320-PB | 55..920 | 26..891 | 4255 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdh-RD | 1796 | CG5320-RD | 259..1377 | 26..1144 | 5595 | 100 | Plus |
| Gdh-RF | 2156 | CG5320-RF | 619..1737 | 26..1144 | 5595 | 100 | Plus |
| Gdh-RB | 1835 | CG5320-RB | 259..1124 | 26..891 | 4255 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23938120..23938445 | 351..26 | 1630 | 100 | Minus |
| 3R | 32079331 | 3R | 23937732..23938052 | 670..350 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 23936377..23936646 | 1144..875 | 1350 | 100 | Minus |
| 3R | 32079331 | 3R | 23937423..23937629 | 875..669 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:46:12 has no hits.
BO24917.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:21 Download gff for
BO24917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RE | 71..1199 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:48 Download gff for
BO24917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RF | 619..1737 | 26..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:56:49 Download gff for
BO24917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RF | 619..1737 | 26..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:56:49 Download gff for
BO24917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23936375..23936645 | 876..1146 | 99 | <- | Minus |
| 3R | 23937423..23937627 | 671..875 | 100 | <- | Minus |
| 3R | 23937732..23938051 | 351..670 | 100 | <- | Minus |
| 3R | 23938121..23938445 | 26..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:48 Download gff for
BO24917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19763145..19763349 | 671..875 | 100 | <- | Minus |
| arm_3R | 19762097..19762367 | 876..1146 | 99 | <- | Minus |
| arm_3R | 19763454..19763773 | 351..670 | 100 | <- | Minus |
| arm_3R | 19763843..19764167 | 26..350 | 100 | | Minus |
BO24917.pep Sequence
Translation from 16 to 1162
> BO24917.pep
MYHLKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGERE
MSWIADTYAKTIGHLDINAHACVTGKPINQGGIHGRVSATGRGVFHGLEN
FINEANYMSQIGTTPGWGGKTFIVQGFGNVGLHTTRYLTRAGATCIGVIE
HDGTLYNPEGIDPKLLEDYKNEHGTIVGYQNAKPYEGENLMFEKCDIFIP
AAVEKVITSENANRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYIN
AGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYHLLESVQESLERRFGRV
GGRIPVTPSESFQKRISGASEKDIVHSGLDYTMERSARAIMKTAMKYNLG
LDLRTAAYVNSIEKIFTTYRDAGLAFASFLDH
BO24917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdh-PD | 391 | CG5320-PD | 19..391 | 4..376 | 1955 | 100 | Plus |
| Gdh-PF | 549 | CG5320-PF | 177..549 | 4..376 | 1955 | 100 | Plus |
| Gdh-PB | 404 | CG5320-PB | 19..404 | 4..376 | 1931 | 96.6 | Plus |
| Gdh-PA | 562 | CG5320-PA | 177..562 | 4..376 | 1931 | 96.6 | Plus |
| CG4434-PA | 535 | CG4434-PA | 167..533 | 6..375 | 878 | 48.8 | Plus |
