BO24920.complete Sequence
2422 bp assembled on 2010-06-25
GenBank Submission: KX795314
> BO24920.complete
GAAGTTATCAGTCGACATGAGCGACTTCCAGCAACAAGGCATCAATCAAT
CGCAGGCACTCGCGCAGGCAATTCAGCGTGCCAAGCAGATCGCAGCCAAG
ATCCAGCCCAGCCAGCAGGGCGGCGGCACAGCGGGTCCATCGCCACCGTC
TTCGGGTGGAGGGCCTGGCTTTAAGCGTATCAACGACGACGGCGACAGCG
GTCCGGAATCCAAACGCTCCTTGGGCAGTCCGGAGTACGCCAACAACAGC
TCCAACATGAGCAGCGGTAGCGGGGGTGGTGGTGGCGGCGGCGGAGGTCC
CGGCGGTGCCAGTATTACTCAGGCAATCGCCCAGGCTGCTGCGGTAGCCG
CTCGTTTGGCCGCCTCGGCGGGAACAAGCTGTGAGGAGCAGATCCGTCTG
CCCGAATCGGTAGCCGGCGCCTTTATGGGTCGCTCCAGTAACGACACCAT
CACCCACATCCAGGCCGAGTCCGGTGTAAAAGTGCAGGTCATGCAGGATC
AAGATCGCGTTATCATGTTGCGTGGTCAAAGGGATACAGTCACTAAGGGG
CGCGAAATGATTCAGAACATGGCCAATCGGGCTGGCGGGGGACAGGTGGA
GGTGCTGTTGACGATCAATATGCCGCCACCGGGACCTAGCGGGTATCCAC
CTTACCAGGAGATCATGATTCCGGGCGCCAAGGTGGGCTTGGTCATTGGC
AAGGGCGGCGATACCATTAAACAGCTGCAGGAGAAGACCGGAGCCAAAAT
GATCATCATCCAGGACGGACCAAACCAGGAGCTGATCAAACCCCTTCGCA
TATCCGGCGAGGCGCAGAAGATAGAGCACGCCAAGCAGATGGTGCTCGAT
CTGATTGCCCAGAAGGATGCACAGGGTCAGCAACAGGGTGGTCGGGGCGG
CGGCGGAGGTGGCGGCGGTCCAGGCATGGGATTCAATAACTTTAATAATG
GCAACGGCGGCGAGAGCACCGAAGTCTTTGTGCCCAAAATTGCAGTTGGC
GTGGTCATCGGCAAAGGCGGCGACATGATACGTAAAATACAAACTGAGTG
CGGCTGCAAACTGCAGTTCATCCAGGGAAAGAACGACGAAATGGGCGACC
GCAGGTGCGTCATTCAGGGCACTCGCCAGCAGGTCGACGATGCCAAGCGC
ACCATTGATGGGCTAATTGAAAACGTTATGCAACGAAATGGCATGAATCG
AAATGGCAATGGAGGAGGCGGTGGCCCAGGAGGAGACTCTGGCAACTCCA
ACTACGGCTATGGGTACGGCGTAAATCACGCTCAAGGTGGACGGGAGGAA
ATTACATTCCTAGTTCCCGCTTCCAAATGTGGAATTGTTATTGGTCGCGG
CGGTGAGACCATCAAGCTGATCAACCAGCAATCTGGAGCGCACACTGAAA
TGGATCGCAATGCCAGCAATCCCCCCAACGAGAAGCTCTTCAAATCTAAG
GGCACCACCGACCAGGTGGAGGCTGCCCGCCAAATGATTTCCGAGAAGAT
CAACATGGAGCTGAATGTCATTTCTCGCAAGCCCATCGGTGGAGGTCCCG
GCGGTGGTGGCGGAAATTCTGGCGGTGGCCAGAACAATTCCCACCACAAT
CAGCAGCAAGGCGGCTATGGCGGCCAGAATCAAATGCAGGGCGGCGATCC
CAACTCGGGAGCTGGCTACCAACAACAGCCTTGGGGTGGACCCTACGGGC
AGCAGGGTTGGGATCCGTCCGGTCAACAGCAGCAAATGGCCATGGCTAAT
CAAGGGGGCTCTGCTGCGGGAGGAGCTTCCGGTGGTCAAGACTACTCGGC
TCAGTGGATCGAGTACTACAAACAAATGGGATGCCATCGTGAGGCTGAAA
TGATCGAGCAGCAAATGAAGGCCAAACAGGCGGGCGGCTCCTCCGGTCCT
GTCCAGCAGCAACAACCCCAACAGCAGCAACAGTCCCAGCAGCAGACAGG
AGGCGCCGGTGCCGGAGGAGCGGACTACAGTGCCCAGTGGGCGGAGTACT
ATCGCAGCGTGGGCAAGATTGAAGAAGCTGAGGCAATCGAAAAGACATTA
AAGAATAAGCAGAACGGATCTGGTGGCCAGAGCAGTACGCCGAATCCCAG
CCAGGGCGGCTCCGGCCAGCAGCAGCCCAATCCCGCTGCGGCGGCGGCGG
CAGCAGCTGCTGCTGCAGCGGCGGCCGGTGGTTATGGCCAGAGCATGACG
CCCACTCAGTATGCACAGTATTCGCAGTATTATGCAGCTGCTGCTGCAGC
TGGTGGTCAGCCCCAGGGAGCGCCTCAGCCCGGCGGAGGGCAGAGCGGTG
GTCCGCCGGGCAACTATCCTGGCAATTATCCGGGCGCTGGTTACGGCGGC
TATCCCGGTGCGCCGGGCCAACAGCAGCAGAAATCGCACAAAAACGACAA
TCACGCAAGCTTTCTAGACCAT
BO24920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psi-RB | 2391 | CG8912-PB | 1..2388 | 17..2404 | 11940 | 100 | Plus |
| Psi-RC | 2394 | CG8912-PC | 1..2391 | 17..2404 | 11875 | 99.9 | Plus |
| Psi-RA | 2151 | CG8912-PA | 1..2148 | 257..2404 | 10740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psi-RB | 3227 | CG8912-RB | 318..2705 | 17..2404 | 11940 | 100 | Plus |
| Psi-RC | 3435 | CG8912-RC | 318..2708 | 17..2404 | 11875 | 99.9 | Plus |
| Psi-RA | 5687 | CG8912-RA | 466..2784 | 86..2404 | 11595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16866155..16867249 | 1180..86 | 5475 | 100 | Minus |
| 2R | 25286936 | 2R | 16865394..16865881 | 1821..1334 | 2440 | 100 | Minus |
| 2R | 25286936 | 2R | 16864689..16865035 | 2404..2058 | 1735 | 100 | Minus |
| 2R | 25286936 | 2R | 16865092..16865329 | 2059..1822 | 1190 | 100 | Minus |
| 2R | 25286936 | 2R | 16865944..16866097 | 1333..1180 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 16867326..16867397 | 88..17 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:44:29 has no hits.
BO24920.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:27:51 Download gff for
BO24920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psi-RB | 317..2704 | 17..2406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:20 Download gff for
BO24920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psi-RB | 318..2705 | 17..2406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:01 Download gff for
BO24920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psi-RB | 318..2705 | 17..2406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:01 Download gff for
BO24920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16864686..16865033 | 2060..2406 | 99 | <- | Minus |
| 2R | 16865092..16865329 | 1822..2059 | 100 | <- | Minus |
| 2R | 16865394..16865881 | 1334..1821 | 100 | <- | Minus |
| 2R | 16865944..16866096 | 1181..1333 | 100 | <- | Minus |
| 2R | 16866155..16867246 | 89..1180 | 100 | <- | Minus |
| 2R | 16867326..16867397 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:20 Download gff for
BO24920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12753449..12753601 | 1181..1333 | 100 | <- | Minus |
| arm_2R | 12752191..12752538 | 2060..2406 | 99 | <- | Minus |
| arm_2R | 12752597..12752834 | 1822..2059 | 100 | <- | Minus |
| arm_2R | 12752899..12753386 | 1334..1821 | 100 | <- | Minus |
| arm_2R | 12753660..12754751 | 89..1180 | 100 | <- | Minus |
| arm_2R | 12754831..12754902 | 17..88 | 100 | | Minus |
BO24920.pep Sequence
Translation from 16 to 2422
> BO24920.pep
MSDFQQQGINQSQALAQAIQRAKQIAAKIQPSQQGGGTAGPSPPSSGGGP
GFKRINDDGDSGPESKRSLGSPEYANNSSNMSSGSGGGGGGGGGPGGASI
TQAIAQAAAVAARLAASAGTSCEEQIRLPESVAGAFMGRSSNDTITHIQA
ESGVKVQVMQDQDRVIMLRGQRDTVTKGREMIQNMANRAGGGQVEVLLTI
NMPPPGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQD
GPNQELIKPLRISGEAQKIEHAKQMVLDLIAQKDAQGQQQGGRGGGGGGG
GPGMGFNNFNNGNGGESTEVFVPKIAVGVVIGKGGDMIRKIQTECGCKLQ
FIQGKNDEMGDRRCVIQGTRQQVDDAKRTIDGLIENVMQRNGMNRNGNGG
GGGPGGDSGNSNYGYGYGVNHAQGGREEITFLVPASKCGIVIGRGGETIK
LINQQSGAHTEMDRNASNPPNEKLFKSKGTTDQVEAARQMISEKINMELN
VISRKPIGGGPGGGGGNSGGGQNNSHHNQQQGGYGGQNQMQGGDPNSGAG
YQQQPWGGPYGQQGWDPSGQQQQMAMANQGGSAAGGASGGQDYSAQWIEY
YKQMGCHREAEMIEQQMKAKQAGGSSGPVQQQQPQQQQQSQQQTGGAGAG
GADYSAQWAEYYRSVGKIEEAEAIEKTLKNKQNGSGGQSSTPNPSQGGSG
QQQPNPAAAAAAAAAAAAAAGGYGQSMTPTQYAQYSQYYAAAAAAGGQPQ
GAPQPGGGQSGGPPGNYPGNYPGAGYGGYPGAPGQQQQKSHKNDNHASFL
DH
BO24920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psi-PB | 796 | CG8912-PB | 1..796 | 1..796 | 4204 | 100 | Plus |
| Psi-PC | 797 | CG8912-PC | 1..797 | 1..796 | 4192 | 99.9 | Plus |
| Psi-PA | 716 | CG8912-PA | 1..716 | 81..796 | 3792 | 100 | Plus |
| Psi-PA | 716 | CG8912-PA | 204..708 | 77..596 | 229 | 24.4 | Plus |
| mam-PD | 1594 | CG8118-PD | 835..1136 | 511..781 | 213 | 28.2 | Plus |
| mam-PB | 1594 | CG8118-PB | 835..1136 | 511..781 | 213 | 28.2 | Plus |
