BO24922.complete Sequence
2395 bp assembled on 2010-06-25
GenBank Submission: KX794841
> BO24922.complete
GAAGTTATCAGTCGACATGAGCGCCACGCCGCCGGACCTACTTTCGTTGG
CGGCGTCCCGAGAAGTCTCGGCCGCCGTCGCAGTCGCCGCCTCTGCCAAC
GGAGGCAGCGGCAGAAGCGCTGATAAGGAGCGTTCACGTTCCAGAGATCG
TGGGCGGGACAAGGATAAGGATCGGGACAAGGACAGGAAGAAGAGGGACA
AAGACAGTAGGGACCGCGACAGTCGCCGGCGGGACGATCGCGGCGACCGA
GATCGTGACCGGGAACGCGACAGGGATTCCCGCTCGCACCGCAGCAAGTC
GCGCAATTACGACGACGGAGACAGACGAAGAAAGCGATCGCGCAGCAGGG
ATCGTGATCGTGACCGCAAGCGGGACAGAGATCGCGACTCCCGCTCCAGG
CGCAGTAGCTCGCGGGGTGGACGTGATGATTATGACCGGAGTCGTCGACG
GCGCTCACGCAGTCGCAGTTACGAGCGTCGACGCAATGATCGAGGCAGTC
AGAGAGATCAACGAGACCAGCATTCGCAAAGAAGCAGTCGGGAACGCACA
CATGTGAACCCCTTCGACACATCCAACAGTCGAAACTCTCTGAATCAGGA
TCACGATCAATCCAGAATCCCGTCGCTCTTCGACCGACAGCAGGGATTGG
AAACCATCAGGGAGGAAGGACGTGAGCAGCGGTTTGATCTTACTCAGACC
ATCCAGGAGCTAATGGGCAATGCTGGAGGCAACAAAGGATTCGCCTCGTT
CTTTAACAGCCAGAACAGCAACGACTCCACCAGCAATGGAGCATTCGATA
ACTCAGCGGACAGCGCTGCGGAGCGAAAGAGGAAGCGGAAGTCTCGCTGG
GGCGGCAGTGAAAACGACAAGACCTTCATTCCTGGAATGCCCACAATTCT
GCCCTCCACCCTGGACCCGGCACAGCAGGAGGCCTACCTAGTTCAATTTC
AAATCGAGGAGATTAGTCGCAAGCTGCGAACCGGCGATCTGGGCATCACG
CAGAATCCGGAAGAAAGATCGCCCTCGCCGGAGCCCATTTATAGTTCTGA
TGGCAAGCGGTTGAACACCCGTGAATTCCGCTACAGGAAAAGACTGGAAG
AGCAGCGTCATCAACTGATCGTCAAAATGCAGACGGTCAACCCAGAGTTC
AAGCCACCAGCGGATTACAAACCGCCAGTCACTCGTGTCAGCGACAAAGT
GCTGATTCCACAGGAGCAGCACCCTGACATCAATTTTGTGGGCCTGCTCA
TCGGGCCGCGAGGCAACACGCTCAAGGCTATGGAGAAGGATACGGGCGCC
AAGATCATAATTCGCGGCAAGGGATCGGTGAAGGAGGGCAAAGTGGGCCG
AAAGGATGGCCAACCGTTGCCGGGCGAGGATGAACCACTGCATGCTTTCA
TTACCGCCCCCAATCCAGAGGCGGTGCGCAAGGCAGTGGACAAAATCAAA
GACGTCATCCGTCAGGGTATCGAAGTGCCCGAGGGCCATAATGATCTCCG
CAGAATGCAGTTGCGAGAACTGGCTCAGCTGAATGGAACACTTCGAGAGA
ACGATATCCAACGCTGTACGTGCGGCTCAACGGATCACAAGTCCTGGCAA
TGTCCGGATAAGCCGATCATCACGAACACCATAGTGTGCACCTCATGTGG
CGGTACCGGTCATTTGACCAAGGATTGCCGCAACAAGCGTCCAGGATCCG
GAGTACCCGGCATGGCCTGCGAAGATTCCCAGGCTAAGATTGACGAGGAG
TATATGAGTTTGATGGCCGAATTGGGAGAAGGACCACCGCCGCCATCCGC
TTCTGCTAAGACCGATCCGCCGGCCAGTAATGGACCGCAGTTGCACCGGG
CCAGCTATAGCATTTTTGACAAGAAGCCCTCCCAGATGCAGGCCATCCAG
TCGCCACCGAGCTCCTCGTCGCGAGATCACCAGCGCGACCTGGGCGGATG
GGGAGCGGCGGCGCACGAACACGGCATGGGCATGGAGCACGGTATGGGAT
TGGACCAGCACGGTCACGGTTTGGCAGCGATGGATCACGGCATGAGCCTT
GGCATGGAGCACGCAATGGCGGCCTATGTGCCGGCACCGCCGGGCACTCA
AGCACCGCCTCCGATGCCGCCGCCGCTGATGCCGTGGATGAGCGCACCGC
AGCCTCCGCCGCCGGCAACAGAACCGCTGAATCCACCTATACCGGGCACC
TTGCCACCGCTAATCCCGCCGCCACCCGGCACCAGTGCCCCGCCCATGCC
GCCGTGGGGTGGTGGCGCTTACAGTGGCTGGGGCGGCGGCTATGCGCCGC
CTCCACCTCCGCCCTGCGCACCGCCGCCACCAGCCTTGAGCCTGTCGCAG
CCGCCGCCACCTCCACCGCCATCCGCTGCAAGCTTTCTAGACCAT
BO24922.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SF1-RA | 2364 | CG5836-PA | 1..2361 | 17..2377 | 11805 | 100 | Plus |
| SF1-RB | 1044 | CG5836-PB | 1..1001 | 17..1017 | 5005 | 100 | Plus |
| SF1-RC | 972 | CG5836-PC | 1..925 | 17..941 | 4625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SF1-RA | 2784 | CG5836-RA | 204..2565 | 16..2377 | 11810 | 100 | Plus |
| SF1-RC | 2708 | CG5836-RC | 1128..2489 | 1016..2377 | 6810 | 100 | Plus |
| SF1-RB | 1533 | CG5836-RB | 204..1205 | 16..1017 | 5010 | 100 | Plus |
| SF1-RC | 2708 | CG5836-RC | 204..1129 | 16..941 | 4630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17543723..17544929 | 1171..2377 | 6035 | 100 | Plus |
| 3R | 32079331 | 3R | 17540974..17541586 | 194..806 | 3065 | 100 | Plus |
| 3R | 32079331 | 3R | 17540624..17540804 | 16..196 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 17543498..17543652 | 1016..1170 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 17541665..17541801 | 805..941 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 17542413..17542490 | 940..1017 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:45:26 has no hits.
BO24922.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:09 Download gff for
BO24922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SF1-RA | 203..2563 | 17..2379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:47 Download gff for
BO24922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SF1-RA | 205..2565 | 17..2379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:24 Download gff for
BO24922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SF1-RA | 205..2565 | 17..2379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:24 Download gff for
BO24922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17543500..17543652 | 1018..1170 | 100 | -> | Plus |
| 3R | 17540625..17540803 | 17..195 | 100 | -> | Plus |
| 3R | 17540976..17541586 | 196..806 | 100 | -> | Plus |
| 3R | 17541667..17541801 | 807..941 | 100 | -> | Plus |
| 3R | 17542415..17542490 | 942..1017 | 100 | -> | Plus |
| 3R | 17543723..17544929 | 1171..2379 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:47 Download gff for
BO24922.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13369222..13369374 | 1018..1170 | 100 | -> | Plus |
| arm_3R | 13366347..13366525 | 17..195 | 100 | -> | Plus |
| arm_3R | 13366698..13367308 | 196..806 | 100 | -> | Plus |
| arm_3R | 13367389..13367523 | 807..941 | 100 | -> | Plus |
| arm_3R | 13368137..13368212 | 942..1017 | 100 | -> | Plus |
| arm_3R | 13369445..13370651 | 1171..2379 | 99 | | Plus |
BO24922.pep Sequence
Translation from 16 to 2395
> BO24922.pep
MSATPPDLLSLAASREVSAAVAVAASANGGSGRSADKERSRSRDRGRDKD
KDRDKDRKKRDKDSRDRDSRRRDDRGDRDRDRERDRDSRSHRSKSRNYDD
GDRRRKRSRSRDRDRDRKRDRDRDSRSRRSSSRGGRDDYDRSRRRRSRSR
SYERRRNDRGSQRDQRDQHSQRSSRERTHVNPFDTSNSRNSLNQDHDQSR
IPSLFDRQQGLETIREEGREQRFDLTQTIQELMGNAGGNKGFASFFNSQN
SNDSTSNGAFDNSADSAAERKRKRKSRWGGSENDKTFIPGMPTILPSTLD
PAQQEAYLVQFQIEEISRKLRTGDLGITQNPEERSPSPEPIYSSDGKRLN
TREFRYRKRLEEQRHQLIVKMQTVNPEFKPPADYKPPVTRVSDKVLIPQE
QHPDINFVGLLIGPRGNTLKAMEKDTGAKIIIRGKGSVKEGKVGRKDGQP
LPGEDEPLHAFITAPNPEAVRKAVDKIKDVIRQGIEVPEGHNDLRRMQLR
ELAQLNGTLRENDIQRCTCGSTDHKSWQCPDKPIITNTIVCTSCGGTGHL
TKDCRNKRPGSGVPGMACEDSQAKIDEEYMSLMAELGEGPPPPSASAKTD
PPASNGPQLHRASYSIFDKKPSQMQAIQSPPSSSSRDHQRDLGGWGAAAH
EHGMGMEHGMGLDQHGHGLAAMDHGMSLGMEHAMAAYVPAPPGTQAPPPM
PPPLMPWMSAPQPPPPATEPLNPPIPGTLPPLIPPPPGTSAPPMPPWGGG
AYSGWGGGYAPPPPPPCAPPPPALSLSQPPPPPPPSAASFLDH
BO24922.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SF1-PA | 787 | CG5836-PA | 1..787 | 1..787 | 4213 | 100 | Plus |
| SF1-PB | 347 | CG5836-PB | 1..334 | 1..334 | 1715 | 100 | Plus |
| SF1-PC | 323 | CG5836-PC | 1..308 | 1..308 | 1585 | 100 | Plus |
| how-PB | 375 | CG10293-PB | 103..289 | 360..538 | 236 | 31.6 | Plus |
| how-PC | 380 | CG10293-PC | 103..289 | 360..538 | 236 | 31.6 | Plus |
