BO24925.complete Sequence
3565 bp assembled on 2010-08-11
GenBank Submission: KX795898
> BO24925.complete
GAAGTTATCAGTCGACATGGAGGTGACATTCAGCTCGGGCGGATCATCGA
ACGCCTCCAGCGAGTGCGCCATAGACGGCGGCACGAATCGCTGTCGCGGC
TTGGAGCCCAACAATGGAACCTGCATCCTCAGCCAGGAGGTAAAGGATCT
TTACAGATCCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAGGA
ATGTGCAGTCGGTGGGACAGCTGTTCCAGCACGAAATCGAAGAGAAACGC
TCGCTCCTAGTGCAGCTGTGCAAGCAGATCATCTTCAAGGACTACCAGTC
GGTGGGCAAGAAGGTGCGCGAGGTGATGTGGCGACGTGGATACTACGAGT
TCATTGCCTTCGTGAAGAAGAACTGGCACAAGCAGTGCCAGGATGCGGCC
ACGGCCCAAGAGAACATGCAAAAGCTGGAGCGATTCCTCTGCGCTGGCAT
CTTCAACTACAAACGATTGTCGGCACGCATGGAAGAGATCTATGATCTGG
ATCTAAAGTATTTGATTGATTTCTCCATAATCAGTGATGGCTACATAAGC
GACATGATCGGAGACACCATGGAGTCATCGCACTCGGGCACCCACGCGGT
GGACAAGAGTCTGGAGGCCGTGTCCTTTGCACTCGACACCATACACTCAT
CGCTGCTCAGTCTGGGCGATCTTCATCGCTACTTTCTAGACTTTCGCATC
GACAGCAAACTAAGCATAAGCAAGGAGCAGGTGGCCAAGTATTATCTGGA
GGCCTTCAAGCTTAATCCGGCCATTGGCATGGCCCAGAACCAGTTGGGTA
CACTGCACTACGGACAGAATCATGACCTGGACTCCACTTACCACTACTTG
TACTCCCTTGTGTGCATCATACCATTCGAACTAAGCGAAAATAATCTTAA
CAAGCTGTTCGCCAAGCACACCGAATACCTAGAGCGTATGGATCCAGAAA
AACTAGACTTCAACATCGAGGACTTCTTTGCCCGTTTCTATCTGATTGTG
GACATATTTTTCTTCGACAAGGAAGTGCCGGACTTTAACGCTCTGTGCCA
CTGTGTGCTGATTGATCTACGCAAGATCCTGTGCTCCCAGCAGCTGCGCG
TTCCGGAGCCAAGCATCTTCAAGATTGTCTCCATTCTGTTCTTCTGTCTG
TCCAAGCTTAAGATGATCAACTCACCAAAGGTTTACTCGCTGCACGCCTT
TCTGGTTGCTGCCTGTTCCGATCTGATGGACGCCTGCATCGTCAGCATCG
AGCAGACAATCCTGGCTCGCGCCCAAGACAACGAGCGCTTCCAGGCGGAG
TACGAGGAACGCTTTCAGGAGTTCGATACTGTGGTGCGCAAGTCCCGGAA
TGAGTACAAGAACTGGCTAGCTGCAGTAGGCGAATGTGAGCGCAAGGACA
AGAAGTTGATGCCACGCCCGCACTCTCTAAAGGATTGCAGTTCGGATTCG
CGGGACAGCCAGCACTCTGGCGAGGAGGCAAAGACCCAGGAGGCTGCTGA
CGGCGACAAGATCGGTGAGGCCGTTTCCACGCGCTCCAGTGACGAGGCCA
AGGAGTCCGACCTTAAGACCCCGCTCTCCTGCAAGAGCAAGCGACGGGGA
ATGCGTCTACGCCGCCGACGCCGCAAGATCGCCCAGTCGGACGACAGCTC
CTGCTATGACAGCGAAAGCGAACTGGACACAGACTTTTACAGCGACGAGG
AGGATTACACAGATCTAAGTTCTAACTTTGACACCGATTTCAGCGACATT
GATGCAGCTGATCCTGGGGAGCCATGCGGCGAAGAGCGCTATGCAGCAGC
TAATTACAGCAAAAAGGAGCGCAAAGCTGGCGGCGGCGGCGGAGGAGGAG
TCGGTGGCGTGGTGTACTCCGACAACGAAGACGTTGTTATTGAGGAGGAG
AAAATCGTGTATCCCAACGAAGTAGAGCGCAGATCCAACTCACAGGAGGC
GGACTCTGAGGAGTTGCTGCGCAGCTTTGAGGTACTGCAGCTGAACTTTA
AGAGCGCAGAGGATGCTCAAAGCAAGCCGGTGGCACCTCCGCCCGTCAGC
TTTTCAGAGCCACCAAAGAAGCTGGTTTATCGCAACAAGTACACCAAGAT
CAATCCCAACATAGTCATTGACTGTCTGCACAATGAACCGACCATTAGAG
CCCTGAAAATGCTTTTTGACTGGCTGCGAATCAACCCAGAGATTCTCATC
GGCTGCTACCACTCGAATCCGGAGTTTGTGCACAAGATCATGAAGCTTCT
CAACTACTGCAACATCGACATCTTCACCAGGAAGGTTTACTTCGAGCGCG
ACCTTCTGACCACTGCCAACGTGCGTGATTCTCTGGTCGAGTTATTCGAT
GTGCGCGCCAACGTTCCGCTCACCGAGGACTTTGCTTTCAAGAACTTTGA
CATCTTCCAGAGCACCCAGATTACACTGGACTGGGAGACCATTATCCGGG
AGCGTGTCACTCCCCAGGAAGAGTCCATTCTCCGTATTTTCAAAATGGTC
GACTTTGGCTTTTTCATTTGCAAGCAGAAGAAGTTTAACTACAGATTCTG
CGTCAAGACGCGTCGTTTCACCGAGACCCAAAAGAAGAAACAGCGCGAGG
AGAAGAAGGGAGGCGGATCACGTCGCCGCGAGCGTCGTACCGCTCCGAAG
ACCAACCGAACAAAGCGGAACGAAGGACGCACACGTCGCTACTCCGATCG
CAAGAACGGCATCGTCCGCAAGAGCTACACCAGTAACGAGGAAAAGGACA
CCGTGGAGGAGTGCCGCAAGATGCCACGCAAGGGTTACCTAAGGAATCGC
AATGCCGAGAAGGCGGCTGCTGTTATAACCAGTGCCACGGGAACCTCTGT
CGCCGGCGGAACCTCCGCCTCCACAACCACAAACAGTGTCATCGAGAAAC
TGAATTTGCAGTCCAGCTCGGGGGCCGACGAAGAGCGCTCGGAGGCCAAG
TCGAAGAAGTGTGAGCTCATGGGCAAGCTGTGGCTGCAAAACGAGGTGGA
GACTTTGGAGGAGGAGCTGCGGGACAGTCCCGCTCATGTGGTGATGTCCC
CATTTGTGGTGGTCGATTCGAAGGCATTGACCGAATACAATGGCATAGTC
AAGTCGCTGGTGAGGACCAAGAAGTGCATTGTCCTCATTCCAAATGCAGT
GCTCAATGAGTTGGATGACTTGAAGAAACGCAGCGAGAATGTGCGCCATG
TCATCCGTTGGCTGGAGCAGGAGTTTAAACAGGGCAATAGGCACTTGCGT
GCCCAGCGCGATAACGAAAGTCAGCCGCTATCCCTGCTGAAGATATCACG
CAAGATGGATCGTGACGCCTCAGTTTTCCTTCAAATTGCCCAGTTCTGCA
ATCACTTGGTGGCCAACCATGCCGATCCGCACGTCAGCGAACTGCAGAAG
AGCGTCGTCACGTACTTGTCCGGCGATAATTTGCACGAGAAGAACCGCCA
GCAACAGAACTTCAGCTACACCGGCATCCTTGACTCGATACCCGTACGCT
ATGCCCAAATCCAGAGCTTCTACGCAAAATTTAAGGCCAACAAAAAAGCA
AGCTTTCTAGACCAT
BO24925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smg5-RC | 3534 | CG8954-PC | 1..3531 | 17..3547 | 17655 | 100 | Plus |
| Smg5-RB | 3534 | CG8954-PB | 1..3531 | 17..3547 | 17655 | 100 | Plus |
| Smg5-RA | 3534 | CG8954-PA | 1..3531 | 17..3547 | 17655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smg5-RC | 4102 | CG8954-RC | 116..3646 | 17..3547 | 17655 | 100 | Plus |
| Smg5-RB | 4809 | CG8954-RB | 282..3812 | 17..3547 | 17655 | 100 | Plus |
| Smg5-RA | 4021 | CG8954-RA | 276..3806 | 17..3547 | 17655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13902075..13903722 | 1799..152 | 8240 | 100 | Minus |
| 2L | 23513712 | 2L | 13900632..13901984 | 3149..1797 | 6765 | 100 | Minus |
| 2L | 23513712 | 2L | 13899825..13900064 | 3547..3308 | 1200 | 100 | Minus |
| 2L | 23513712 | 2L | 13900143..13900303 | 3308..3148 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 13903781..13903920 | 156..17 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:55:18 has no hits.
BO24925.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 10:33:27 Download gff for
BO24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RB | 165..3686 | 17..3538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:24 Download gff for
BO24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RA | 276..3797 | 17..3538 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:47 Download gff for
BO24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RA | 276..3797 | 17..3538 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:47 Download gff for
BO24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13900143..13900301 | 3150..3308 | 100 | <- | Minus |
| 2L | 13899834..13900063 | 3309..3538 | 100 | <- | Minus |
| 2L | 13900632..13901981 | 1800..3149 | 100 | <- | Minus |
| 2L | 13902075..13903717 | 157..1799 | 100 | <- | Minus |
| 2L | 13903781..13903920 | 17..156 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:24 Download gff for
BO24925.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13899834..13900063 | 3309..3538 | 100 | <- | Minus |
| arm_2L | 13900143..13900301 | 3150..3308 | 100 | <- | Minus |
| arm_2L | 13900632..13901981 | 1800..3149 | 100 | <- | Minus |
| arm_2L | 13902075..13903717 | 157..1799 | 100 | <- | Minus |
| arm_2L | 13903781..13903920 | 17..156 | 100 | | Minus |
BO24925.pep Sequence
Translation from 16 to 3565
> BO24925.pep
MEVTFSSGGSSNASSECAIDGGTNRCRGLEPNNGTCILSQEVKDLYRSLY
TASKQLDDAKRNVQSVGQLFQHEIEEKRSLLVQLCKQIIFKDYQSVGKKV
REVMWRRGYYEFIAFVKKNWHKQCQDAATAQENMQKLERFLCAGIFNYKR
LSARMEEIYDLDLKYLIDFSIISDGYISDMIGDTMESSHSGTHAVDKSLE
AVSFALDTIHSSLLSLGDLHRYFLDFRIDSKLSISKEQVAKYYLEAFKLN
PAIGMAQNQLGTLHYGQNHDLDSTYHYLYSLVCIIPFELSENNLNKLFAK
HTEYLERMDPEKLDFNIEDFFARFYLIVDIFFFDKEVPDFNALCHCVLID
LRKILCSQQLRVPEPSIFKIVSILFFCLSKLKMINSPKVYSLHAFLVAAC
SDLMDACIVSIEQTILARAQDNERFQAEYEERFQEFDTVVRKSRNEYKNW
LAAVGECERKDKKLMPRPHSLKDCSSDSRDSQHSGEEAKTQEAADGDKIG
EAVSTRSSDEAKESDLKTPLSCKSKRRGMRLRRRRRKIAQSDDSSCYDSE
SELDTDFYSDEEDYTDLSSNFDTDFSDIDAADPGEPCGEERYAAANYSKK
ERKAGGGGGGGVGGVVYSDNEDVVIEEEKIVYPNEVERRSNSQEADSEEL
LRSFEVLQLNFKSAEDAQSKPVAPPPVSFSEPPKKLVYRNKYTKINPNIV
IDCLHNEPTIRALKMLFDWLRINPEILIGCYHSNPEFVHKIMKLLNYCNI
DIFTRKVYFERDLLTTANVRDSLVELFDVRANVPLTEDFAFKNFDIFQST
QITLDWETIIRERVTPQEESILRIFKMVDFGFFICKQKKFNYRFCVKTRR
FTETQKKKQREEKKGGGSRRRERRTAPKTNRTKRNEGRTRRYSDRKNGIV
RKSYTSNEEKDTVEECRKMPRKGYLRNRNAEKAAAVITSATGTSVAGGTS
ASTTTNSVIEKLNLQSSSGADEERSEAKSKKCELMGKLWLQNEVETLEEE
LRDSPAHVVMSPFVVVDSKALTEYNGIVKSLVRTKKCIVLIPNAVLNELD
DLKKRSENVRHVIRWLEQEFKQGNRHLRAQRDNESQPLSLLKISRKMDRD
ASVFLQIAQFCNHLVANHADPHVSELQKSVVTYLSGDNLHEKNRQQQNFS
YTGILDSIPVRYAQIQSFYAKFKANKKASFLDH
BO24925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smg5-PC | 1177 | CG8954-PC | 1..1177 | 1..1177 | 6097 | 100 | Plus |
| Smg5-PB | 1177 | CG8954-PB | 1..1177 | 1..1177 | 6097 | 100 | Plus |
| Smg5-PA | 1177 | CG8954-PA | 1..1177 | 1..1177 | 6097 | 100 | Plus |
