BO24932.complete Sequence
856 bp assembled on 2012-04-24
GenBank Submission: KX798927
> BO24932.complete
GAAGTTATCAGTCGACATGTCCTGCACCGTTTCCGAGCTGCCCAGTGGCT
GTCGATTGCGCGGCATGACTGCATCCTCACAGCAAAGTGCCGCCAACAAT
AGTGGCAACAATGGGAATGGCAATGGGAACGGTGGCGGCGGGGGCGTCGT
CGGAGGTGGCGGCAGCCTGGGCGGAGTATCGCCCACCGTGGGCGGCAGCG
TGGGAATCCTCGGCTCCACGTCCAACGTGCTGCAGGAGTCGAACGCGACC
ACGTTTCAGCGTCCGCAGTCGCAGAAGCCTTGCTGCTTCTGCTGGTGCTG
CTGCTGCTCCTGCTCCTGGGCCAAATGTCTGGCCATCAAGAATGCCGATG
AAAATGCCCCCACGAAGCGAGATCTGGTAAATGCCGAATTCTTGGATGGC
GAGCAACCCACACTGGAGGAAATCCGCAGCTGGGGCAAAAGCTTTGACAA
GCTGATGAAAAGTACAGCTGGTCGAAAGGTGTTCCAGAACTTCCTGCGCA
GCGAATTCAGTGAGGAGAACATCCTATTCTGGCTGGCCTGCGAGGATCTC
AAGAAGGAGAATAGCCCAGAGTTGGTGGAGGAGAAGGCGCGCCTCATCTA
CGAGGACTACATCTCGATCCTGTCGCCCAGGGAGGTGTCGCTGGACTCCA
GGGTCCGCGAGATTGTCAACCGGAACATGATCGAGCCCACGACGCACACC
TTCGACGAAGCTCAAATCCAGATCTACACACTGATGCACAGAGACTCATA
TCCGAGATTCCTAAACTCTCAAAAGTTCAAGACACTAGCTCAACTGCAAG
ACAACTCGAATGCCGGTTCCAAAGCGGATAGTCCAACTGCAAGCTTTCTA
GACCAT
BO24932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhit-RB | 825 | CG5036-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
| Dhit-RC | 816 | CG5036-PC | 1..813 | 17..838 | 3940 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhit-RB | 2873 | CG5036-RB | 1689..2511 | 16..838 | 4115 | 100 | Plus |
| Dhit-RC | 4762 | CG5036-RC | 1689..2502 | 16..838 | 3945 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17795126..17795429 | 16..319 | 1520 | 100 | Plus |
| 2R | 25286936 | 2R | 17797325..17797616 | 465..756 | 1460 | 100 | Plus |
| 2R | 25286936 | 2R | 17797683..17797766 | 755..838 | 420 | 100 | Plus |
| 2R | 25286936 | 2R | 17797053..17797131 | 327..405 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 17797202..17797263 | 406..467 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:01:13 has no hits.
BO24932.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:08:03 Download gff for
BO24932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5036-RA | 1678..2490 | 17..840 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:51 Download gff for
BO24932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5036-RB | 1678..2499 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:01 Download gff for
BO24932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5036-RB | 1690..2511 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:10 Download gff for
BO24932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhit-RB | 1690..2511 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:10 Download gff for
BO24932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17797202..17797263 | 406..467 | 100 | -> | Plus |
| 2R | 17797685..17797766 | 757..840 | 97 | | Plus |
| 2R | 17795127..17795428 | 17..318 | 100 | -> | Plus |
| 2R | 17797046..17797131 | 319..405 | 93 | -> | Plus |
| 2R | 17797328..17797616 | 468..756 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:01 Download gff for
BO24932.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13682632..13682933 | 17..318 | 100 | -> | Plus |
| arm_2R | 13684551..13684636 | 319..405 | 93 | -> | Plus |
| arm_2R | 13684707..13684768 | 406..467 | 100 | -> | Plus |
| arm_2R | 13684833..13685121 | 468..756 | 100 | -> | Plus |
| arm_2R | 13685190..13685271 | 757..840 | 97 | | Plus |
BO24932.pep Sequence
Translation from 16 to 856
> BO24932.pep
MSCTVSELPSGCRLRGMTASSQQSAANNSGNNGNGNGNGGGGGVVGGGGS
LGGVSPTVGGSVGILGSTSNVLQESNATTFQRPQSQKPCCFCWCCCCSCS
WAKCLAIKNADENAPTKRDLVNAEFLDGEQPTLEEIRSWGKSFDKLMKST
AGRKVFQNFLRSEFSEENILFWLACEDLKKENSPELVEEKARLIYEDYIS
ILSPREVSLDSRVREIVNRNMIEPTTHTFDEAQIQIYTLMHRDSYPRFLN
SQKFKTLAQLQDNSNAGSKADSPTASFLDH
BO24932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhit-PB | 274 | CG5036-PB | 1..274 | 1..274 | 1452 | 100 | Plus |
| Dhit-PC | 271 | CG5036-PC | 1..271 | 1..274 | 1418 | 98.9 | Plus |
| CG42450-PA | 1244 | CG42450-PA | 482..616 | 121..257 | 217 | 34.1 | Plus |
| CG42450-PB | 1280 | CG42450-PB | 482..616 | 121..257 | 217 | 34.1 | Plus |
| loco-PF | 782 | CG5248-PF | 64..190 | 138..264 | 212 | 33.9 | Plus |
