BO24933.complete Sequence
844 bp assembled on 2010-06-03
> BO24933.complete
GAAGTTATCAGTCGACATGACCACCGCCGCCTCCACATCGCAGCATGCGA
CATCGTCCTCCACAATGATGGCGGGCTCTGGATCCTTGGCGACCTCGTCG
TCCGCCGCTGCCCCCACAACCACGCCCAGCAGCTCGGCCGTTCGCGCCCT
GGCCATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCCATACGCT
TCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGATCTGTGC
ATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCGAGCTGCC
CTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTGCTGTCGG
TCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAACGTGGAC
GCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGACAATGAGTATCC
AAACATCATACGAAAACAGGCACTGGCCGCCAATGCCGAGGCCAAGCGGG
AGGGCATTGTGGTTCCGATGACCCTGGAGGACTACTGCCTGAAGCCCACG
CGCAAGCCCACAACGGAGTCTGGCCTGGATGCCAACTTCTACGATGATGA
TTTCGATCTGGAGACGGAGGATGATCTGCCATCTGATGATGACTTCGATG
AGGACGACGACGATGATGAGGACGAGGATGAAGATGAGGACAGTGCCACG
GCGCCGATTAGCAAAAATAATGGAGGCAGCAGCAAGTGCAAGAACAACGG
GCTGGTCAGAGAGGCGGCCGCCGCCGGAGCGGACGATGCCGAATCCGCTG
ATGACAGCGGCAAGGGCGAGACCACAGCAAGCTTTCTAGACCAT
BO24933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RF | 954 | CG7656-PF | 279..951 | 154..826 | 3365 | 100 | Plus |
CG7656-RA | 954 | CG7656-PA | 279..951 | 154..826 | 3365 | 100 | Plus |
CG7656-RE | 960 | CG7656-PE | 279..957 | 154..826 | 3270 | 99.1 | Plus |
CG7656-RF | 954 | CG7656-PF | 1..145 | 17..161 | 710 | 99.3 | Plus |
CG7656-RA | 954 | CG7656-PA | 1..145 | 17..161 | 710 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RF | 2027 | CG7656-RF | 581..1253 | 154..826 | 3365 | 100 | Plus |
CG7656-RA | 1504 | CG7656-RA | 431..1103 | 154..826 | 3365 | 100 | Plus |
CG7656-RE | 1234 | CG7656-RE | 431..1109 | 154..826 | 3270 | 99.1 | Plus |
CG7656-RF | 2027 | CG7656-RF | 303..447 | 17..161 | 710 | 99.3 | Plus |
CG7656-RA | 1504 | CG7656-RA | 153..297 | 17..161 | 710 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15586205..15586596 | 826..435 | 1960 | 100 | Minus |
3L | 28110227 | 3L | 15587004..15587287 | 437..154 | 1420 | 100 | Minus |
3L | 28110227 | 3L | 15587421..15587565 | 161..17 | 710 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:46:25 has no hits.
BO24933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:24 Download gff for
BO24933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RA | 144..286 | 17..160 | 98 | -> | Plus |
CG7656-RA | 429..1094 | 161..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:50 Download gff for
BO24933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RA | 153..295 | 17..160 | 98 | -> | Plus |
CG7656-RA | 438..1103 | 161..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:56:54 Download gff for
BO24933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RA | 153..295 | 17..160 | 98 | -> | Plus |
CG7656-RA | 438..1103 | 161..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:56:54 Download gff for
BO24933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15586203..15586594 | 437..828 | 99 | <- | Minus |
3L | 15587005..15587280 | 161..436 | 100 | <- | Minus |
3L | 15587423..15587565 | 17..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:50 Download gff for
BO24933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15579303..15579694 | 437..828 | 99 | <- | Minus |
arm_3L | 15580105..15580380 | 161..436 | 100 | <- | Minus |
arm_3L | 15580523..15580665 | 17..160 | 98 | | Minus |
BO24933.pep Sequence
Translation from 16 to 844
> BO24933.pep
MTTAASTSQHATSSSTMMAGSGSLATSSSAAAPTTTPSSSAVRALAMKFP
HDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWN
PTQNVRTILLSVISLLNEPNTFSPANVDASVMYRRWRDSQDNEYPNIIRK
QALAANAEAKREGIVVPMTLEDYCLKPTRKPTTESGLDANFYDDDFDLET
EDDLPSDDDFDEDDDDDEDEDEDEDSATAPISKNNGGSSKCKNNGLVREA
AAAGADDAESADDSGKGETTASFLDH
BO24933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-PF | 317 | CG7656-PF | 1..317 | 1..270 | 1362 | 85.2 | Plus |
CG7656-PA | 317 | CG7656-PA | 1..317 | 1..270 | 1362 | 85.2 | Plus |
CG7656-PE | 319 | CG7656-PE | 1..319 | 1..270 | 1349 | 84.6 | Plus |
CG7656-PD | 319 | CG7656-PD | 1..319 | 1..270 | 1349 | 84.6 | Plus |
Ubc7-PB | 167 | CG4443-PB | 42..161 | 31..150 | 291 | 47.5 | Plus |