Clone BO24933 Report

Search the DGRC for BO24933

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:249
Well:33
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO24933.pep: Imported from assembly
Sequenced Size:844

Clone Sequence Records

BO24933.complete Sequence

844 bp assembled on 2010-06-03

> BO24933.complete
GAAGTTATCAGTCGACATGACCACCGCCGCCTCCACATCGCAGCATGCGA
CATCGTCCTCCACAATGATGGCGGGCTCTGGATCCTTGGCGACCTCGTCG
TCCGCCGCTGCCCCCACAACCACGCCCAGCAGCTCGGCCGTTCGCGCCCT
GGCCATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCCATACGCT
TCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGATCTGTGC
ATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCGAGCTGCC
CTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTGCTGTCGG
TCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAACGTGGAC
GCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGACAATGAGTATCC
AAACATCATACGAAAACAGGCACTGGCCGCCAATGCCGAGGCCAAGCGGG
AGGGCATTGTGGTTCCGATGACCCTGGAGGACTACTGCCTGAAGCCCACG
CGCAAGCCCACAACGGAGTCTGGCCTGGATGCCAACTTCTACGATGATGA
TTTCGATCTGGAGACGGAGGATGATCTGCCATCTGATGATGACTTCGATG
AGGACGACGACGATGATGAGGACGAGGATGAAGATGAGGACAGTGCCACG
GCGCCGATTAGCAAAAATAATGGAGGCAGCAGCAAGTGCAAGAACAACGG
GCTGGTCAGAGAGGCGGCCGCCGCCGGAGCGGACGATGCCGAATCCGCTG
ATGACAGCGGCAAGGGCGAGACCACAGCAAGCTTTCTAGACCAT

BO24933.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RF 954 CG7656-PF 279..951 154..826 3365 100 Plus
CG7656-RA 954 CG7656-PA 279..951 154..826 3365 100 Plus
CG7656-RE 960 CG7656-PE 279..957 154..826 3270 99.1 Plus
CG7656-RF 954 CG7656-PF 1..145 17..161 710 99.3 Plus
CG7656-RA 954 CG7656-PA 1..145 17..161 710 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RF 2027 CG7656-RF 581..1253 154..826 3365 100 Plus
CG7656-RA 1504 CG7656-RA 431..1103 154..826 3365 100 Plus
CG7656-RE 1234 CG7656-RE 431..1109 154..826 3270 99.1 Plus
CG7656-RF 2027 CG7656-RF 303..447 17..161 710 99.3 Plus
CG7656-RA 1504 CG7656-RA 153..297 17..161 710 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15586205..15586596 826..435 1960 100 Minus
3L 28110227 3L 15587004..15587287 437..154 1420 100 Minus
3L 28110227 3L 15587421..15587565 161..17 710 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 04:46:25 has no hits.

BO24933.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:24 Download gff for BO24933.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 144..286 17..160 98 -> Plus
CG7656-RA 429..1094 161..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:50 Download gff for BO24933.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 153..295 17..160 98 -> Plus
CG7656-RA 438..1103 161..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:56:54 Download gff for BO24933.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RA 153..295 17..160 98 -> Plus
CG7656-RA 438..1103 161..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:56:54 Download gff for BO24933.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15586203..15586594 437..828 99 <- Minus
3L 15587005..15587280 161..436 100 <- Minus
3L 15587423..15587565 17..160 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:50 Download gff for BO24933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579303..15579694 437..828 99 <- Minus
arm_3L 15580105..15580380 161..436 100 <- Minus
arm_3L 15580523..15580665 17..160 98   Minus

BO24933.pep Sequence

Translation from 16 to 844

> BO24933.pep
MTTAASTSQHATSSSTMMAGSGSLATSSSAAAPTTTPSSSAVRALAMKFP
HDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWN
PTQNVRTILLSVISLLNEPNTFSPANVDASVMYRRWRDSQDNEYPNIIRK
QALAANAEAKREGIVVPMTLEDYCLKPTRKPTTESGLDANFYDDDFDLET
EDDLPSDDDFDEDDDDDEDEDEDEDSATAPISKNNGGSSKCKNNGLVREA
AAAGADDAESADDSGKGETTASFLDH

BO24933.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PF 317 CG7656-PF 1..317 1..270 1362 85.2 Plus
CG7656-PA 317 CG7656-PA 1..317 1..270 1362 85.2 Plus
CG7656-PE 319 CG7656-PE 1..319 1..270 1349 84.6 Plus
CG7656-PD 319 CG7656-PD 1..319 1..270 1349 84.6 Plus
Ubc7-PB 167 CG4443-PB 42..161 31..150 291 47.5 Plus