BO24943.complete Sequence
3027 bp assembled on 2010-08-11
> BO24943.complete
GAAGTTATCAGTCGACATGTCGTTGCGCAGCAACAAGTTGCACAGCCAAC
AGTCGACGGCCAGCAGCAACAGCAACGGCAGCAACAGTAGCGGCAACAGC
GGCAGCAACAGCAACGTGCAGCAGCAACATCCACCGATGGCGTACCAGCA
GCAGCAGCAACAACTGCTGCAACAGCTGCAGCAGCAGCAGAAGTTCCAGG
CGCAGCAGCGGGGCAACACCAGTCGCAATAATCTGGCCACATTGGTGGCG
GCCATCAATGGACACGACGGCGGTCAGAACTCACCCGGCAACAGTGGCTA
TCAATTGTCACCCGCTGCGGCCTCCAGGGTGGCCCATGCTCCGCCCCACT
CGCCGCTGGGTCCACCCTCATACTCAGCGGCCACCGCTCAGTCCGCCTTC
AGCTACTACGGACAACATCAGCAGCATCAGATGCAACTGAATCACAATTA
CCAGCAACAGCAGCAGCAACAGTTTCAGTTGCAGCAGCAACAGCAGCAGC
TGCAGCTACCACCGCCCGATCTCACCGATGGCATCGATCATCCCTCCGCC
CAGGCTGCCACGCCGCCGGACTCGCCAAACGCCCAGTCCACTGGCCCATC
GGATCTGGAGCAGCAGCTCTGTGTGGTCGCCAAGATGCAGAAGTCGGTGA
CCATAACAGTCACGCCGCAGCGCAGCAACTCCATGGACTTCCTCAACTTC
GAGGAGAAGCGTCAGCTCATCGCCTCGTCGTTATCCTTATCGGATATCCT
GCACAGCAGCAACGCGCAGCAGCAGCAGCAGCAGGCGGCCAAGGATGGAC
TGGCCATTAACGGGGGGCAGTGCGCTAAGAAACAGAATGGAGCTGCCATA
CGCACAAATAGCCTGGGTTCGGGCACTAGGACGCCACCTTTGGAAAGGAA
GAGCAAACTCAGTGCCCTGGGCAGATTCTTTAAGCCCTGGAAATGGCGAC
GGAAAAAGAAGAGCGAGAAGTTCGAGGCGGCCTCCAAATCCCTGGAGCGT
AAGATTTCTGTGCGTGCCAATCGTGATGAGCTAGTGCAAAAGGGGATTCT
AATGCCTGAGAGTCCCCTGGGCAATATTCCAGAACCAGGCGAGGAGTCGT
ATTATAACAACAGCAATAGTGGAGCCACCGCGAATGGATCCCTGCTCAAC
TCAGCCGTCCACAATAATTCCATGAGCCAGGCCAATAATTCCATAAATGC
CACCACCGGCAATCCGCTCATCTCCGCCGCCCAGCAGCAGCTGAACCAGG
GACTTCCCAACTCGATCTCCGTGCAGCAGTTCAACGGTCAGAACCAGAAT
CCACAGAATTCCATGGCCAATGGCCTAGTGGGTGGCGGCGGCGGCGGTGG
AGACGGTTCCTCGGACACGTCTTCCCTCAGCGGCGGCGTTCCGCACTCGC
AGTCGGCGCCCCAGCAACTGGGGGTGGGGCAACCACCACCACCCCTAACA
CCACTGGCCCAGCACCACCAGGCGCTGGCACAGCAGCTGCAGCAGCGATT
CGCCATCAGCAACAATAACGAACCAAGAAAAGACAAGACTGATGCACAAC
AACAACAACACGGAGGCAATGGCACAATATCCACGCCCAACATCGAGCAG
CCCACCTGCCAGGGCTCGATGCTGCCGCCCCCCGGAGGCGGTGGCCATCA
CCAGGTGGACGGGAGTGGCAAGATGGAGCGGCCCAACACGCTCGCCGGCG
CCAATAAGCTGACCCGTCGCGGGGTCAACATCTGCTATCACAACGAGCAC
ATGTATGGCGAAGATGGAAAAATGGTGGGTGGTCCGCCGGGCAGCACTCC
GCCCCCGTATCCGGGTGGCAAACTACCGCCGGGCGTAATGCTCAGCGAAC
TGCCGGAGCCGCCGATTCCGCTGTCGGAGATCGGACCGATCCCACCGCCC
CCGATGTTCTCCACTCCGAGTCCCACGCTCATCGCAGGACGACCGCACGG
GCCAGGGGCCGTCAACGATCAGGATTATCAGCAGGACTACGACTACGATG
ATAACGATCCCGATCAGGATGAGCTTGACTCGGACGATGAGTACGCCCCG
TATGGTGGCAACCATGTGCGCATGATGGACACGCAACGCGTCGAGGAAAT
TCCAGCCAAAGAGCCCAAACCAAATGCAGTTCCTCTCAAGTCGGCGCTGA
AGAAGAAGGGCGGTATGCAGCCCGCTTCCGCCTCCACGCCGGTCACGCCC
ACCCAGGAACATGGAGCGGGAAGTGCGGCAACGGCAGCGGCCATGGCAAA
CAGCAATGGCGGTATTGGCTCGATGGCGGCAGCTGCCGCAGCTGCGGCCC
AACAATCCGCCAACCAACGACCGCTGGTCGTTCGCCAGGATGCGGCGGGC
AATAACTATTCGCTCAACAGGCAGCAAATGTTCAACATCCAATTGCCGTG
CACCGTGGAGAACAAGGAGAACGCCCGGCCATTTGTGATACGCGAAAGCA
GCAGCGATAGTGACGACAGCGATGGCCATATCGTCTACAGGGACGAGGAC
AACGACAACACCCGGCTGGCCAAACTGGCCCGCAAGGAGTCGCTGTCCCT
GAAGCTGCAGCTCCGACCGGACAAGCAGGACCTGATCAACCGCAACATCC
TGCACCAGGTCAACGACAACGAGCTCAAGGAGTCCAAGGAGGCGATCGGA
GCACGCCTCATCCGGCGGCTGTCCATGCGACCCACGGCCGAGGAGCTGGT
CGAGCGCAACATCTTGAAAACTCAATCACCCGCCGAGGAGAAGAAGCAGA
AGGAGGAGAAGAAGTCGTATCTGTTGCGCAAACTCAGCTTTCGGCCGACC
GTCGAGGAGCTGAAGGAGAAGAAGATCATCCGATTCAACGACTACATCGA
GGTCACGCAGGCCCACGACTACGATCGGCGGGCGGACAAGCCGTGGACAA
GACTGACGCCAAAGGACAAGGCCGCCATTCGCAAGGAGCTGAACGAGTTC
AAGTCCTCCGAAATGGCCGTCCACGAGGGCAGTCGGCATTTGACGAGATT
CCATAGGCCCAGCAAGCTTTCTAGACC
BO24943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RE | 2997 | CG32264-PE | 1..2993 | 17..3009 | 14965 | 100 | Plus |
| CG32264-RD | 3027 | CG32264-PD | 1..2351 | 17..2367 | 11755 | 100 | Plus |
| CG32264-RM | 2784 | CG32264-PM | 595..2780 | 824..3009 | 10930 | 100 | Plus |
| CG32264-RD | 3027 | CG32264-PD | 2382..3023 | 2368..3009 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-RE | 3764 | CG32264-RE | 592..3585 | 16..3009 | 14970 | 100 | Plus |
| CG32264-RD | 3788 | CG32264-RD | 586..2937 | 16..2367 | 11760 | 100 | Plus |
| CG32264-RM | 3767 | CG32264-RM | 1403..3588 | 824..3009 | 10930 | 100 | Plus |
| CG32264-RD | 3788 | CG32264-RD | 2968..3609 | 2368..3009 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3780418..3781231 | 829..16 | 4055 | 99.9 | Minus |
| 3L | 28110227 | 3L | 3767137..3767571 | 1520..1086 | 2175 | 100 | Minus |
| 3L | 28110227 | 3L | 3722156..3722523 | 2367..2000 | 1840 | 100 | Minus |
| 3L | 28110227 | 3L | 3718638..3718990 | 2720..2368 | 1765 | 100 | Minus |
| 3L | 28110227 | 3L | 3718196..3718472 | 2997..2721 | 1385 | 100 | Minus |
| 3L | 28110227 | 3L | 3722856..3723105 | 2004..1755 | 1235 | 99.6 | Minus |
| 3L | 28110227 | 3L | 3723639..3723873 | 1754..1520 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 3769242..3769407 | 989..824 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 3769077..3769176 | 1089..990 | 500 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2435..2539 | 399..504 | 212 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2499 | 375..542 | 183 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6944 | 400..494 | 150 | 65.3 | Plus |
| Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 877..942 | 2483..2418 | 123 | 65.2 | Minus |
BO24943.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 10:33:30 Download gff for
BO24943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RE | 593..3585 | 17..3010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:28 Download gff for
BO24943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RE | 593..3585 | 17..3010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:51 Download gff for
BO24943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32264-RE | 593..3585 | 17..3010 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:51 Download gff for
BO24943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3723639..3723872 | 1521..1754 | 100 | <- | Minus |
| 3L | 3718196..3718472 | 2721..2997 | 100 | <- | Minus |
| 3L | 3718638..3718990 | 2368..2720 | 100 | <- | Minus |
| 3L | 3722156..3722522 | 2001..2367 | 100 | <- | Minus |
| 3L | 3722860..3723105 | 1755..2000 | 100 | <- | Minus |
| 3L | 3767137..3767568 | 1089..1520 | 100 | <- | Minus |
| 3L | 3769078..3769176 | 990..1088 | 100 | <- | Minus |
| 3L | 3769242..3769406 | 825..989 | 100 | <- | Minus |
| 3L | 3780423..3781230 | 17..824 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:28 Download gff for
BO24943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3723639..3723872 | 1521..1754 | 100 | <- | Minus |
| arm_3L | 3718196..3718472 | 2721..2997 | 100 | <- | Minus |
| arm_3L | 3718638..3718990 | 2368..2720 | 100 | <- | Minus |
| arm_3L | 3722156..3722522 | 2001..2367 | 100 | <- | Minus |
| arm_3L | 3722860..3723105 | 1755..2000 | 100 | <- | Minus |
| arm_3L | 3767137..3767568 | 1089..1520 | 100 | <- | Minus |
| arm_3L | 3769078..3769176 | 990..1088 | 100 | <- | Minus |
| arm_3L | 3769242..3769406 | 825..989 | 100 | <- | Minus |
| arm_3L | 3780423..3781230 | 17..824 | 100 | | Minus |
BO24943.pep Sequence
Translation from 16 to 3025
> BO24943.pep
MSLRSNKLHSQQSTASSNSNGSNSSGNSGSNSNVQQQHPPMAYQQQQQQL
LQQLQQQQKFQAQQRGNTSRNNLATLVAAINGHDGGQNSPGNSGYQLSPA
AASRVAHAPPHSPLGPPSYSAATAQSAFSYYGQHQQHQMQLNHNYQQQQQ
QQFQLQQQQQQLQLPPPDLTDGIDHPSAQAATPPDSPNAQSTGPSDLEQQ
LCVVAKMQKSVTITVTPQRSNSMDFLNFEEKRQLIASSLSLSDILHSSNA
QQQQQQAAKDGLAINGGQCAKKQNGAAIRTNSLGSGTRTPPLERKSKLSA
LGRFFKPWKWRRKKKSEKFEAASKSLERKISVRANRDELVQKGILMPESP
LGNIPEPGEESYYNNSNSGATANGSLLNSAVHNNSMSQANNSINATTGNP
LISAAQQQLNQGLPNSISVQQFNGQNQNPQNSMANGLVGGGGGGGDGSSD
TSSLSGGVPHSQSAPQQLGVGQPPPPLTPLAQHHQALAQQLQQRFAISNN
NEPRKDKTDAQQQQHGGNGTISTPNIEQPTCQGSMLPPPGGGGHHQVDGS
GKMERPNTLAGANKLTRRGVNICYHNEHMYGEDGKMVGGPPGSTPPPYPG
GKLPPGVMLSELPEPPIPLSEIGPIPPPPMFSTPSPTLIAGRPHGPGAVN
DQDYQQDYDYDDNDPDQDELDSDDEYAPYGGNHVRMMDTQRVEEIPAKEP
KPNAVPLKSALKKKGGMQPASASTPVTPTQEHGAGSAATAAAMANSNGGI
GSMAAAAAAAAQQSANQRPLVVRQDAAGNNYSLNRQQMFNIQLPCTVENK
ENARPFVIRESSSDSDDSDGHIVYRDEDNDNTRLAKLARKESLSLKLQLR
PDKQDLINRNILHQVNDNELKESKEAIGARLIRRLSMRPTAEELVERNIL
KTQSPAEEKKQKEEKKSYLLRKLSFRPTVEELKEKKIIRFNDYIEVTQAH
DYDRRADKPWTRLTPKDKAAIRKELNEFKSSEMAVHEGSRHLTRFHRPSK
LSR
BO24943.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32264-PE | 998 | CG32264-PE | 1..998 | 1..998 | 5204 | 100 | Plus |
| CG32264-PD | 1008 | CG32264-PD | 1..1008 | 1..998 | 5177 | 98.9 | Plus |
| CG32264-PM | 927 | CG32264-PM | 47..927 | 133..998 | 3839 | 84.2 | Plus |
| CG32264-PK | 822 | CG32264-PK | 20..822 | 147..998 | 3821 | 88.1 | Plus |
| CG32264-PL | 759 | CG32264-PL | 31..759 | 270..998 | 3819 | 100 | Plus |
