BO24944.complete Sequence
2602 bp assembled on 2010-06-25
GenBank Submission: KX797602
> BO24944.complete
GAAGTTATCAGTCGACATGCTCACGTCTCAAAGTTGTTCATTTGTACGGC
TGTTGATTGCAAAGATGATATTGAGGAGCCTCCTACAAAACGTAGCTCGA
ATTCCTGAGTTTGAACAACTGTGGCGGGATATTCTTTTCAATCCTAAAAT
GTTGCATCAAACTTTTAACGGAATTTGGCAACTACTGCATATACGGACAA
GTCGAAGGTTTCTGCAATGCCGTCTGCTGCCTGAGATGGAACGAAAAATA
AGCTTCTTAGCATCTTCTGTTAAGTTTGGAAATCAGAAGAGATACCAAGA
TTGGTTTCAGGACAAATACTTTGCTACACCTGAGTCTCATAGCTTGCGAT
CTGATCTAATTCGATTTATCATAAATGTCATCCATCCCACAAACGATATG
TTGTGCTCTGATATTATACCGCGATGGGCAATCATAGGTTGGCTCATCTC
GTCCTGCACCAATCCAATCGCTTCTGCTAATGCAAAGTTGTCATTGTTTT
ATGATTGGTTATTTTTTGATCCTGCCAAGGATAATATAATGAATATAGAG
CCTGGAATTTTAGTTATGTACCACTCTATAAGAAATCATCCATTTGTTAG
TAGCACGCTGTTGGATTTCTTATGCCGTATTACAAAAAACTTTTTCGTAA
AACATGAAGATAAAATTCGCATTGGTGTTTATAATTCATTGAAATTAATT
CTTGAAAAGCAGGTGATACCAAATCTGCAACCACTTTTTGAGTCACCCAA
ACTTGACAGAGAACTGCGTAATTTAATAAGGGACAATTTTAGAGAGTTTT
TATCACCGCCGGCTAATCACGGACAGCTACTGTTCACTTCCCTGCATCCA
GTTCAGGGTCATATTTTAAAAAAAGAGAGCGATCAAAGAATTTTACATTG
TGAAAACATGGACCTTCATGAAACTGGGCTCATAAATATTAGTGGGACAA
TCGATGAAGACAAAAAGATCTTACTCGTGCCAACGGATCAAGAAATTGAA
AGTGTTTTTAGCGACGAAACTGCTGAAAATTTAAGAAGAGTTCACAACAT
TGAGGACAATACGGATGACGACGATGACCTACCATTATCAGAGGTAAGAC
TTAAAGAAAAGCCAAAGGTAGAACTAGCAGAAGCAATAGCCGAATCTTTT
GATGCATTTGTTACGAAGCGTAACTCATACACTTGGGAGGCGTTTTTGAA
AGATTTCCGGCCATTACCAGCGTCTGCGTTTGAAGAGTTTCAGCTGAACT
ATGTGATATCAAATACTGTTTTAATTTTACGGGAGACTTTGCCTCAACAA
AATATATTTTCCGAGAGCAAAACCGAAGAAAAACATTTGGCAAAAAGTAT
AAGTTATCCTTTGTACGGTTTGTTTCGATTTTTATATGAAAACGACGAAA
AAAGCAAAAAACCATTTCAAACCTTGCTGTCAGAAATCTGTGAAGGAATA
CCTGAAATTGGCTATTTGCTTCTGTACTTTATGAAAATTTATTGTAAGCT
TCAAACGCGCAAAAACTCCCAACAATCATATCAGTTTAAAACAACTATTT
ATCGACAAATTTGCGATGCGGCAGATGAGAAAATCGGCAATTGTCTGTTA
CGGGATCTTGATCTGCTAGAAAAGGAAAACACAAATATTTTTTTATGGCT
CCTGCCTGATATATATAGAGAGTTTAAGTCAATAGCAACAAATAACACTG
ATCTTTTGCGAATAACACTGCGTTGCATAGATGCAAAAAATGTGCGTGAC
ATATTATACTCAATCGCACAAGGAAAACTTACAATATTTAAACAAGATGG
TCTCATTGATTGCATAAGGCAAAGTCTCGAGTTTGAGACATACGAACAGT
TTTGCCTTTGGCAAATTGTTCAAGCTCACGATGTACCCTTAAGGTGTATA
CAGGACATATTGCCAGAACTGGAAGCCGGAAGTCATCCCGAAGCTTTAAG
CCATTTTCTGTTATTGCTTAAAAATGAAGAACCCACAAATGAAATTATTC
GATTAATGCTTAGCAGAGAATCGAAGTCGAAAGGTGATCCATTCGTAACC
TCAGCCTTAAGATTCTGGTGTCAACGCTATGAAGAAAAACTGTCTGAAAT
CATTGCTTCCCTGCTTACATCAAAATACCCCAGTTCATCTCCCAACAAAA
GAAAACGACCCCCCAAGGGGATTTCTGTCTCGACTAGCACTCCTTCTGCT
GATCAAGTATTAAATCATCTGGAGCATTATAGAAGAAGTTGCAGACATGG
CACTGGAACTGGCCTTTACGTTCATGATATGATGCAGAGAGCACTTCAAT
CGGCTTACTCTCACAGTAATGATAGTACTAAGAAACAATTTTGTGATTTG
TTCGCCCTGGCAGCGGAAGAAGATACCACAGTTGGCCGACGTGGGGGAAG
CGGACGTGGACGTAAACAACCAGGGAGTAAGAAAGATGTCAATAATCATG
GGACAAGTAAAAAAAATCCCGAGATGGTTAAAACAATATATTCCTCCGAT
GACAATTCTAGCGAGGAGGATTGGTCAAAATCTAAAATATTGCAAACGGC
TAAGAGAAGGAAAAAAGCTAACAATGATTCTGACGCAAGCTTTCTAGACC
AT
BO24944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-RA | 3207 | CG17665-PA | 698..3204 | 78..2584 | 12535 | 100 | Plus |
| IntS3-RA | 3207 | CG17665-PA | 26..87 | 17..78 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-RA | 3382 | CG17665-RA | 785..3291 | 78..2584 | 12535 | 100 | Plus |
| IntS3-RA | 3382 | CG17665-RA | 113..174 | 17..78 | 310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4236913..4237732 | 1904..1085 | 4070 | 99.8 | Minus |
| 2R | 25286936 | 2R | 4238516..4239158 | 719..77 | 3200 | 99.8 | Minus |
| 2R | 25286936 | 2R | 4238017..4238210 | 1095..902 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 4238273..4238465 | 902..710 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 4235994..4236179 | 2516..2331 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 4236699..4236858 | 2061..1902 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 4236410..4236559 | 2209..2060 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 4236237..4236362 | 2332..2207 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 4235870..4235940 | 2584..2514 | 355 | 100 | Minus |
| 2R | 25286936 | 2R | 4242761..4242822 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:45:18 has no hits.
BO24944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:28:06 Download gff for
BO24944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17665-RB | 118..2685 | 17..2586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:42 Download gff for
BO24944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 113..176 | 17..77 | 95 | <- | Plus |
| IntS3-RA | 785..3291 | 78..2586 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:24:20 Download gff for
BO24944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 113..176 | 17..77 | 95 | <- | Plus |
| IntS3-RA | 785..3291 | 78..2586 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:24:20 Download gff for
BO24944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4236237..4236362 | 2207..2332 | 100 | <- | Minus |
| 2R | 4235995..4236177 | 2333..2515 | 100 | <- | Minus |
| 2R | 4236413..4236557 | 2062..2206 | 100 | <- | Minus |
| 2R | 4236699..4236856 | 1904..2061 | 100 | <- | Minus |
| 2R | 4235866..4235938 | 2516..2586 | 97 | <- | Minus |
| 2R | 4236914..4237723 | 1094..1903 | 100 | <- | Minus |
| 2R | 4238019..4238209 | 903..1093 | 100 | <- | Minus |
| 2R | 4238273..4238462 | 713..902 | 100 | <- | Minus |
| 2R | 4238523..4239156 | 79..712 | 100 | <- | Minus |
| 2R | 4242761..4242822 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:42 Download gff for
BO24944.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 123371..123443 | 2516..2586 | 97 | <- | Minus |
| arm_2R | 123500..123682 | 2333..2515 | 100 | <- | Minus |
| arm_2R | 123742..123867 | 2207..2332 | 100 | <- | Minus |
| arm_2R | 123918..124062 | 2062..2206 | 100 | <- | Minus |
| arm_2R | 124204..124361 | 1904..2061 | 100 | <- | Minus |
| arm_2R | 124419..125228 | 1094..1903 | 100 | <- | Minus |
| arm_2R | 125524..125714 | 903..1093 | 100 | <- | Minus |
| arm_2R | 125778..125967 | 713..902 | 100 | <- | Minus |
| arm_2R | 126028..126661 | 79..712 | 100 | <- | Minus |
| arm_2R | 130266..130327 | 17..78 | 100 | | Minus |
BO24944.pep Sequence
Translation from 16 to 2602
> BO24944.pep
MLTSQSCSFVRLLIAKMILRSLLQNVARIPEFEQLWRDILFNPKMLHQTF
NGIWQLLHIRTSRRFLQCRLLPEMERKISFLASSVKFGNQKRYQDWFQDK
YFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWLISSCTNP
IASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLD
FLCRITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFESPKLDREL
RNLIRDNFREFLSPPANHGQLLFTSLHPVQGHILKKESDQRILHCENMDL
HETGLINISGTIDEDKKILLVPTDQEIESVFSDETAENLRRVHNIEDNTD
DDDDLPLSEVRLKEKPKVELAEAIAESFDAFVTKRNSYTWEAFLKDFRPL
PASAFEEFQLNYVISNTVLILRETLPQQNIFSESKTEEKHLAKSISYPLY
GLFRFLYENDEKSKKPFQTLLSEICEGIPEIGYLLLYFMKIYCKLQTRKN
SQQSYQFKTTIYRQICDAADEKIGNCLLRDLDLLEKENTNIFLWLLPDIY
REFKSIATNNTDLLRITLRCIDAKNVRDILYSIAQGKLTIFKQDGLIDCI
RQSLEFETYEQFCLWQIVQAHDVPLRCIQDILPELEAGSHPEALSHFLLL
LKNEEPTNEIIRLMLSRESKSKGDPFVTSALRFWCQRYEEKLSEIIASLL
TSKYPSSSPNKRKRPPKGISVSTSTPSADQVLNHLEHYRRSCRHGTGTGL
YVHDMMQRALQSAYSHSNDSTKKQFCDLFALAAEEDTTVGRRGGSGRGRK
QPGSKKDVNNHGTSKKNPEMVKTIYSSDDNSSEEDWSKSKILQTAKRRKK
ANNDSDASFLDH
BO24944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-PA | 1068 | CG17665-PA | 234..1068 | 22..856 | 4370 | 100 | Plus |
