BO24945.complete Sequence
1846 bp assembled on 2012-04-24
GenBank Submission: KX796762
> BO24945.complete
GAAGTTATCAGTCGACATGAACATCCCCATCTACCAAGTGCCCTCGGTGA
CCATGCAGTCGCTGCACCAGCAATCTTTGTACCAGCAAACCTATTTGGAT
CGCAATCGCATGGTCACCGATGTATTTGTGCAGGAACACGTCTCGCAGAG
CTCTTGGTCAATGGCCGGTTCATCGGCTGTTTTTATACCAGGCCCCATTA
TAACTGGTAGTGCCCATGGACACTGCCATCATACCGCGACAGTTTCGACT
GTAAGTCCTCAATTAGCGACCTTTATGCCTTTTCCGGGCATGCAGTACTA
TGCGGCAAGCTCAGCCACGATGAACGCCTATGGCCATAATCAGATGTATT
CTACTCGTGCTTCGGCCTCCGTCGGCTTCTATTTGCCACAGTACCATGCA
AGCTGCAGTCATGAACAGCCGAAAAAGACGTTCTGTGCGGCTCAAACGCA
GACCCAGCAGACGGCTAAGACCAGTTGCGATGTGGGCACCCAGGTGGATT
TGGATGCTGAAGAATTGCGCTCGGAGGCTAGGAAGCCAAGACCAGAAAGT
GTTGTTCCTGAAGAATCGAGCATTAGTTCATTGGAAAGCGGCGCAGGCGA
TGGTTTCCGAGTGCAAAAAAAGCTGCGCAACTCGGAGGTAAAGCTGCTGG
ACCAGCGTCTCCATGATATTACCAGAGTTTCACTTCATGGCAGTGAGATA
GCCGAACGTCTGGCCAATGCCCATCGCAATCGTCCGTGCTTCAAGAAGAT
CGATACACTGTGCGCCCGCCTGAAGCAGGATCTGCTGCGTCCGGATGGCG
TGCTGCCAAATATAAACTCACAGGGCATTGCTTGGGCCGTTAAGGATTTC
ATATTCGTCTTTACGCGCATTGTGAATGCCTGGGTCATACTGAAGGGCTA
CGTGTATAATACTCCCGATGCTTTGAACAAGATTAAAGATGAGCTGCCGT
CGGGCTTTATGGCTTCCTTTGATTCTTGGCAGATCTCAACCCTGTCCATC
GTAAAGATGATTGTAAAATCCTTTGTAAATCTGGATGAGCTGCTGCAGAA
GCAGAAGAACAGCTTTTCCGGAAAAGATGGGGCTCCCATTAACCAAAGCA
ATAGCATCTCTCTAAGAAGTTTTATAGATAGCAACGATAGCAGCGGCTTG
GCACAGAAGTACCTGGGAATGACCACTGGACATGGACCCAGTGCCTTTAG
TACACCTAATAACCAAATACGTAATAATGCAGCCTCAAAAGGCCAAGAAC
CCACTTCATCTGCACTTTACAAACCGAAATGTGCATTAAATCTAAACTAT
CTGTACACCATGATAGAGGATTCGGAGGAAACCCAACGCCATGTAGATGC
CAATGGTACTTATCTGAAAACCGGAACGTATCAACCACTGCAAAAGGAGT
CGATGCAACTGGAGATGCCGCCAGCCAAGCCAAATGACCATTATGTGGAG
CGGAATGCTAACCAACAGGCTTTGCCATCTCAAGAGATTCCTAACGCTCC
AACTCCGAAATCATCTCCACAGTCGGATCGTCCGCGAGATGTGAGGTCGT
ACACGAATCCATTTAGCGCGATCGGAAAAGAGGTTACCCGGCAGCTGTAC
GAGTTCAGTGACCGTGTCATGGAGCTAAAAAACTTGGAGCGCTTCTTTAA
GAAGCAGTTCACTCGCAACTATTATCCAAATTTCTATCAGCATTGCCAGG
ATGATTTTATAGACGTGCGTGCCATTATTTTGCGGTGCGAGAATTCCTCA
TACCATCACATTTATCAGGCTATCCATGATCTGCGCCGGATCATCTTTAC
GGTGCGCTGTTATCTGCAGGTCAAGGAAGCAAGCTTTCTAGACCAT
BO24945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtsh-RC | 1815 | CG7795-PC | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| mtsh-RD | 1950 | CG7795-PD | 1..1803 | 17..1819 | 9015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtsh-RC | 2528 | CG7795-RC | 232..2044 | 16..1828 | 9065 | 100 | Plus |
| mtsh-RD | 2501 | CG7795-RD | 232..2035 | 16..1819 | 9020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8317837..8318961 | 1672..548 | 5625 | 100 | Minus |
| 2L | 23513712 | 2L | 8319379..8319677 | 314..16 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 8319076..8319312 | 549..313 | 1185 | 100 | Minus |
| 2L | 23513712 | 2L | 8317632..8317780 | 1821..1673 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:03:17 has no hits.
BO24945.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:08:08 Download gff for
BO24945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7795-RA | 245..1900 | 17..1672 | 100 | == | Plus |
| CG7795-RA | 1901..2040 | 1691..1827 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:53 Download gff for
BO24945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RC | 219..2030 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:11 Download gff for
BO24945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RC | 233..2044 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:51 Download gff for
BO24945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtsh-RC | 233..2044 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:51 Download gff for
BO24945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8317632..8317780 | 1673..1821 | 100 | <- | Minus |
| 2L | 8317837..8318959 | 550..1672 | 100 | <- | Minus |
| 2L | 8319076..8319310 | 315..549 | 100 | <- | Minus |
| 2L | 8319379..8319676 | 17..314 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:11 Download gff for
BO24945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8317632..8317780 | 1673..1821 | 100 | <- | Minus |
| arm_2L | 8317837..8318959 | 550..1672 | 100 | <- | Minus |
| arm_2L | 8319076..8319310 | 315..549 | 100 | <- | Minus |
| arm_2L | 8319379..8319676 | 17..314 | 100 | | Minus |
BO24945.pep Sequence
Translation from 16 to 1846
> BO24945.pep
MNIPIYQVPSVTMQSLHQQSLYQQTYLDRNRMVTDVFVQEHVSQSSWSMA
GSSAVFIPGPIITGSAHGHCHHTATVSTVSPQLATFMPFPGMQYYAASSA
TMNAYGHNQMYSTRASASVGFYLPQYHASCSHEQPKKTFCAAQTQTQQTA
KTSCDVGTQVDLDAEELRSEARKPRPESVVPEESSISSLESGAGDGFRVQ
KKLRNSEVKLLDQRLHDITRVSLHGSEIAERLANAHRNRPCFKKIDTLCA
RLKQDLLRPDGVLPNINSQGIAWAVKDFIFVFTRIVNAWVILKGYVYNTP
DALNKIKDELPSGFMASFDSWQISTLSIVKMIVKSFVNLDELLQKQKNSF
SGKDGAPINQSNSISLRSFIDSNDSSGLAQKYLGMTTGHGPSAFSTPNNQ
IRNNAASKGQEPTSSALYKPKCALNLNYLYTMIEDSEETQRHVDANGTYL
KTGTYQPLQKESMQLEMPPAKPNDHYVERNANQQALPSQEIPNAPTPKSS
PQSDRPRDVRSYTNPFSAIGKEVTRQLYEFSDRVMELKNLERFFKKQFTR
NYYPNFYQHCQDDFIDVRAIILRCENSSYHHIYQAIHDLRRIIFTVRCYL
QVKEASFLDH
BO24945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtsh-PC | 604 | CG7795-PC | 1..604 | 1..604 | 3161 | 100 | Plus |
| mtsh-PD | 649 | CG7795-PD | 1..602 | 1..602 | 3148 | 99.8 | Plus |
