BO24946.complete Sequence
475 bp assembled on 2010-06-03
GenBank Submission: KX799815
> BO24946.complete
GAAGTTATCAGTCGACATGGATCGCAATAATGGACGCTATCCCTACAACA
TTAGGCGGCAGAACAGCGGGCACAATGCGCCGCACAGCTACCATCACCAC
CATAACAACAATTCGGCGGCGGGGGCGTCCAATTCGCCGGGATACAATAA
CCACAGTGCCGGAAACTCTCCGTCCGTCGGTGGCCATAACAACAGCAATC
CGCTCTACGCCTCCGCCGCCGGACAGCAGCAGCAACAACAGCAACCACAG
AGCCTGCCAATCTCGCAGCACGATGAGCTCATCCGGTACATCCGGGGGGC
ATGGATCAAGGTCTACGAACAGGGTCCACCTGTGCTGTACTGCAACGAAT
CCGACAATCAGCTGAAGAACTTTAAGCCATTCGATTTGGAGGAGTACTGG
GGCCAGCGCCTGGTGCAGAACATCCATGTGACCACCACGCAGGCCGGTGG
ACACCAGGCAAGCTTTCTAGACCAT
BO24946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34159-RA | 444 | CG34159-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34159-RA | 936 | CG34159-RA | 128..570 | 15..457 | 2215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10203382..10203661 | 312..33 | 1400 | 100 | Minus |
2L | 23513712 | 2L | 10202886..10203034 | 457..309 | 745 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:50:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1050..1138 | 161..250 | 131 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2537 | 42..259 | 127 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1594 | 224..260 | 124 | 84.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1053..1121 | 209..278 | 122 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2402 | 183..250 | 120 | 69.6 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3257..3319 | 183..249 | 119 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2364 | 223..278 | 118 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2659 | 188..249 | 117 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2408..2444 | 223..259 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6823 | 223..250 | 113 | 89.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2483 | 79..250 | 112 | 54.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..6907 | 188..250 | 111 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2348 | 206..250 | 110 | 73.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2803..2851 | 222..270 | 110 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6829..6884 | 223..278 | 109 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2411 | 224..250 | 108 | 88.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2876 | 184..256 | 108 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6391..6571 | 76..259 | 107 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6791 | 223..278 | 107 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6812 | 223..278 | 107 | 69.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1135..1162 | 223..250 | 104 | 85.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1541 | 214..250 | 104 | 75.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5654..5690 | 223..259 | 104 | 75.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6802 | 223..250 | 104 | 85.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6866..6923 | 187..242 | 104 | 71.2 | Plus |
BO24946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 13:59:41 Download gff for
BO24946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34159-RA | 97..537 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:43 Download gff for
BO24946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34159-RA | 130..570 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:03 Download gff for
BO24946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34159-RA | 130..570 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:03 Download gff for
BO24946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10202884..10203032 | 311..459 | 98 | <- | Minus |
2L | 10203384..10203660 | 34..310 | 100 | <- | Minus |
2L | 10204172..10204188 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:43 Download gff for
BO24946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10202884..10203032 | 311..459 | 98 | <- | Minus |
arm_2L | 10203384..10203660 | 34..310 | 100 | <- | Minus |
arm_2L | 10204172..10204188 | 17..33 | 100 | | Minus |
BO24946.pep Sequence
Translation from 16 to 475
> BO24946.pep
MDRNNGRYPYNIRRQNSGHNAPHSYHHHHNNNSAAGASNSPGYNNHSAGN
SPSVGGHNNSNPLYASAAGQQQQQQQPQSLPISQHDELIRYIRGAWIKVY
EQGPPVLYCNESDNQLKNFKPFDLEEYWGQRLVQNIHVTTTQAGGHQASF
LDH
BO24946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34159-PA | 147 | CG34159-PA | 1..147 | 1..147 | 819 | 100 | Plus |